High-performance computing (HPC) systems use various specialized storage and file systems, each with different performance levels and best-use scenarios. Here, we explain how to properly use these systems for your research. We also introduce common filesystems, their architectures, appropriate I/O patterns, and key Linux tools for managing storage usage, backups, and file permissions.
Remote event
The 7NRP Workshop will take place in La Jolla, California from Tuesday, May 5, 2026 through Thursday, May 7th. The Workshop will cover both the current state of NRP as well as its future direction.
Remote event
This talk highlights advances in GPU-accelerated molecular simulations and the hardware that enables them. We will begin with an overview of modern GPU architectures, supercomputers, and programming models that leverage massive parallelism for scientific computing. We will then discuss GPU-optimized molecular dynamics simulations with Amber and quantum chemistry calculations with QUICK, a massively parallel Hartree-Fock and DFT program that performs all major computations on GPUs. Together, these tools enable efficient QM/MM molecular dynamics simulations across diverse GPU platforms. Advances in software and GPU technology are thus transforming the scale and accuracy of simulations for complex chemical and biological systems.
Remote event
Essentials of using regular expressions (regexes) with the Linux tools grep, awk and sed. Topics include quantifiers, wildcards, grouping, alternation, word boundaries, lazy and greedy matching and regex flavors. Attendees should at least be familiar with grep.
Remote event
This session introduces key strategies for transitioning computations to HPC systems, including using pre-installed software, compiling code with appropriate tools, and setting up Python, R, and conda environments. It also covers workflow management and introduces containerized solutions with Singularity, featuring hands-on practice on SDSC resources.
Remote event
The San Diego Supercomputer Center (SDSC) Cyberinfrastructure-Enabled Machine Learning (CIML) is focused on teaching researchers and students the best practices for effectively running artificial intelligence (AI), machine learning (ML), and deep learning (DL) applications on advanced cyberinfrastructure (CI) and high-performance computing (HPC) systems. The National Artificial Intelligence Research Resource (NAIRR) pilot is an NSF-led initiative designed to democratize access to AI research by providing U.S. researchers and educators with crucial infrastructure, including computational power, datasets, and training tools.
San Diego Supercomputer Center
The SDSC Summer Institute is a week-long workshop hosted annually by the San Diego Supercomputer Center (SDSC) at UC San Diego, focusing on introductory-to-intermediate topics in High Performance Computing (HPC), Data Science, and Artificial Intelligence (AI). Designed for researchers and educators in academia and industry, the program equips participants to solve scientific challenges exceeding local computing capabilities.
San Diego Supercomputer Center