A B E G I M P S U Z

A

AlignmentViewer - class edu.sdsc.plantsp.vis.AlignmentViewer.

AlignmentViewer() - Constructor for class edu.sdsc.plantsp.vis.AlignmentViewer

B

buildModel() - Method in class edu.sdsc.plantsp.vis.AlignmentViewer

buildModel() - Method in class edu.sdsc.plantsp.vis.ExonProteinViewer

E

ExonController - class edu.sdsc.plantsp.vis.ExonController.

ExonController(Component, Component) - Constructor for class edu.sdsc.plantsp.vis.ExonController

ExonProteinViewer - class edu.sdsc.plantsp.vis.ExonProteinViewer.

ExonProteinViewer() - Constructor for class edu.sdsc.plantsp.vis.ExonProteinViewer

ExonViewer - class edu.sdsc.plantsp.vis.ExonViewer.

ExonViewer() - Constructor for class edu.sdsc.plantsp.vis.ExonViewer

G

getSequence(int, int) - Method in class edu.sdsc.plantsp.vis.sequenceViewer

I

initialize() - Method in class edu.sdsc.plantsp.vis.ExonController

M

minimumSize() - Method in class edu.sdsc.plantsp.vis.sequenceViewer

modify(int) - Method in class edu.sdsc.plantsp.vis.AlignmentViewer

modify(int) - Method in class edu.sdsc.plantsp.vis.ExonController

modify(int) - Method in class edu.sdsc.plantsp.vis.ExonProteinViewer

modify(int, int) - Method in class edu.sdsc.plantsp.vis.AlignmentViewer

modify(int, int) - Method in class edu.sdsc.plantsp.vis.ExonController

modify(int, int) - Method in class edu.sdsc.plantsp.vis.ExonProteinViewer

P

paint(Graphics) - Method in class edu.sdsc.plantsp.vis.sequenceViewer

Draw textLayout and either: the selection range (if a range of characters is selected), or the carets (if the selection range is 0-length).

parent - Variable in class edu.sdsc.plantsp.vis.sequenceViewer

preferredSize() - Method in class edu.sdsc.plantsp.vis.sequenceViewer

S

sequenceViewer - class edu.sdsc.plantsp.vis.sequenceViewer.

This class utilizes TextLayout to select text.

sequenceViewer(Component, String) - Constructor for class edu.sdsc.plantsp.vis.sequenceViewer

sequenceViewer(Component, String, boolean) - Constructor for class edu.sdsc.plantsp.vis.sequenceViewer

setAnchorEnd(int) - Method in class edu.sdsc.plantsp.vis.sequenceViewer

setCodebase(URL) - Method in class edu.sdsc.plantsp.vis.ExonController

setDocumentBase(URL) - Method in class edu.sdsc.plantsp.vis.ExonController

setExonViewer(Component) - Method in class edu.sdsc.plantsp.vis.ExonController

setGeneStructures(ArrayList) - Method in class edu.sdsc.plantsp.vis.sequenceViewer

setSelectedArea(int, int) - Method in class edu.sdsc.plantsp.vis.sequenceViewer

setServerpath(String) - Method in class edu.sdsc.plantsp.vis.ExonController

setTargetProtein(String) - Method in class edu.sdsc.plantsp.vis.AlignmentViewer

setTargetProtein(String) - Method in class edu.sdsc.plantsp.vis.ExonProteinViewer

U

updateExons(ArrayList, int) - Method in class edu.sdsc.plantsp.vis.ExonViewer

updateModel(ArrayList) - Method in class edu.sdsc.plantsp.vis.AlignmentViewer

updateModel(ArrayList) - Method in class edu.sdsc.plantsp.vis.ExonProteinViewer

Z

zoom(boolean) - Method in class edu.sdsc.plantsp.vis.ExonController

zoomIn() - Method in class edu.sdsc.plantsp.vis.sequenceViewer

zoomOut() - Method in class edu.sdsc.plantsp.vis.sequenceViewer

A B E G I M P S U Z