C E G I M S

C

compareTo(Object) - Method in class edu.sdsc.plantsp.model.GeneStructure

contains(int) - Method in class edu.sdsc.plantsp.model.GeneStructure

E

Exon - class edu.sdsc.plantsp.model.Exon.

Exon(int, int) - Constructor for class edu.sdsc.plantsp.model.Exon

ExonProtein - class edu.sdsc.plantsp.model.ExonProtein.

ExonProtein(int, int) - Constructor for class edu.sdsc.plantsp.model.ExonProtein

expand(int, int) - Method in class edu.sdsc.plantsp.model.GeneStructure

G

GeneStructure - class edu.sdsc.plantsp.model.GeneStructure.

GeneStructure(int, int) - Constructor for class edu.sdsc.plantsp.model.GeneStructure

getEnd() - Method in class edu.sdsc.plantsp.model.GeneStructure

getHighlightColor() - Method in class edu.sdsc.plantsp.model.GeneStructure

getName() - Method in class edu.sdsc.plantsp.model.GeneStructure

getStart() - Method in class edu.sdsc.plantsp.model.GeneStructure

getStatus() - Method in class edu.sdsc.plantsp.model.GeneStructure

I

intervalOverlaps(int) - Method in class edu.sdsc.plantsp.model.GeneStructure

Intron - class edu.sdsc.plantsp.model.Intron.

Intron(int, int) - Constructor for class edu.sdsc.plantsp.model.Intron

isCurrent(int) - Method in class edu.sdsc.plantsp.model.GeneStructure

isDuplicate() - Method in class edu.sdsc.plantsp.model.GeneStructure

M

main(String[]) - Static method in class edu.sdsc.plantsp.model.GeneStructure

modifyStructure(int, int) - Method in class edu.sdsc.plantsp.model.Exon

modifyStructure(int, int) - Method in class edu.sdsc.plantsp.model.ExonProtein

modifyStructure(int, int) - Method in class edu.sdsc.plantsp.model.GeneStructure

modifyStructure(int, int) - Method in class edu.sdsc.plantsp.model.Intron

S

setCurrent() - Method in class edu.sdsc.plantsp.model.GeneStructure

setCurrent(int) - Method in class edu.sdsc.plantsp.model.GeneStructure

setDuplicate() - Method in class edu.sdsc.plantsp.model.GeneStructure

setHighlightColor(Color) - Method in class edu.sdsc.plantsp.model.GeneStructure

setName(String) - Method in class edu.sdsc.plantsp.model.GeneStructure

setStatus(int) - Method in class edu.sdsc.plantsp.model.GeneStructure

C E G I M S