Evening Journal Club Season Fall/Winter 2005
Curators: Ilya
Shindyalov, Julia Ponomarenko and Phil Bourne. Venue: CRB. Schedule: Nearly Every
Monday (except holidays). Notes: Pizza and **** will be served (courtesy of
Phil Bourne).
|
Date |
Subject |
Presented by |
Slides |
|
9/12/05 |
Bradford JR, Westhead DR. Improved prediction of
protein-protein binding sites using a support vector machines approach.
Bioinformatics, 2005, 21, 1487-1494. click here for supplementary material
(provided by the authors) |
Julia Ponomarenko |
|
|
9/19/05 |
Lupyan D, Leo‑Macias A,
Ortiz AR. A new progressive-iterative algorithm for multiple structure
alignment.
Bioinformatics, 2005, 21, 3255-3263. |
Ilya Shindyalov |
|
|
9/26/05 |
Ferraro DM, Hope EK, Robertson AD. Site-specific reflex
response of ubiquitin to loop insertion. J Mol Biol, 2005, 352, 575-584. |
Jenny Gu |
|
|
10/10/05 |
Magliery TJ, Regan L. Sequence variation in ligand
binding sites in proteins. BMC Bioinformatics, 2005, 6, 240. |
Alexandr Kornev |
|
|
10/17/05 |
Yinghao W, Mingzhi C,
Mingyang L, Qinghua W, Jianpeng M. Determining protein topology from
skeletons of secondary structures. J Mol Biol, 2005, 350, 571-586. |
Song Yang |
|
|
11/7/05 |
Mikkelsen TS et al. Initial sequence of the chimpanzee
genome and comparison with the human genome. Nature, 2005, 437, 69-87. |
Phil Bourne |
|
|
11/14/05 |
Ben-Shimon A, Eisenstein M. Looking
at enzymes from the inside out: the proximity of catalytic residues to the
molecular centroid can be used for detection of active sites and
enzyme-ligand interfaces. J Mol Biol, 2005, 351, 309-326.
click here
for pdf
|
Vicente Reyes |
|
|
11/21/05 |
Silber K, Heidler
P, Kurz T, Klebe G. AFMoC enhances predictivity of 3D QSAR: A case study with
DOXP-reductoisomerase. J Med Chem,
2005, 48, 3547-3563. |
Lei Xie |
|
|
11/28/05 |
Tompa P, Szasz C and Buday L. Structural disorder throws
new light on moonlighting. Trends Biochem Sci, 2005, 30, 484-489. |
Stella Veretnik |
|
|
12/5/05 |
Gong H, Flemming PJ,
|
Apostol Gramada |
|
|
12/12/05 |
Chakrabarti R, Klibanov AM, Friesner RA. Computational
prediction of native protein ligand-binding and enzyme active site sequences.
PNAS, 2005, 102, 10153-10158. |
Jo-Lan Chung |
|
|
12/19/05 |
1.
Tumpey TM et al. Characterization of the reconstructed
1918 Spanish influenza pandemic virus. Science, 2005, 310, 77-80. 2.
Taubenberger JK et al. Characterization of the 1918
influenza virus polymerase genes. Nature, 2005, 437, 889-893. |
Kristine Briedis |
|