Date	Subject	Presented by
01/05/2004	Nobeli, Ponstingl, Krissinel, Thornton, J Mol. Biol. (2003) 234, 697-719 A structure-based anatomy of E. coli metabolome. Click here for PDF	Ilya Shindyalov
01/26/2004	Vogel, Berzuini, Bashton, Gough, Teichmann, J. Mol. Biol. (2004) Supra-domains: Evolutionary Units Larger than Single Protein Domains, In Press, Uncorrected Proof, Available online 15 January 2004 Click here for PDF	Julia Ponomarenko
02/02/2004	Lupas, Ponting, Russell, Journal of Structural Biology (2001) 134, 191-203 On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion or relics of an ancient peptide world? Click here for PDF	Stella Veretnik
02/23/2004	Greene, Higman, J. Mol. Biol. (2003) 334, 781-791 Uncovering network systems within protein structure. Click here for PDF	Robert Byrnes
03/01/2004	Koonin, Fedorova, Jackson, Jacobs, Krylov, Makarova, Mazumder, Mekhedov, Nikolskaya, Rao, Rogozin, Smirnov, Sorokin, Sverdlov, Vasudevan, Wolf, Yin, Natale, Genome Biology (2004) 5, R7 A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes Click here for PDF	Wilfred Li
03/15/2004	Wangikar, Tendulkar, Ramya, Mali, Sarawagi, J. Mol. Biol. (2003) 326, 955-978 Functional sites in protein families uncovered via an objective and automated graph theoretic approach. Click here for PDF	Alexandr Kornev
04/19/2004	Tiana, Shakhnovich, Dokholyan, Shakhnovich. Imprint of evolution on protein structures. Proc Natl Acad Sci U S A (2004) 101, 2846-2851. Click here for PDF	Phil Bourne
05/03/2004	Tseng, Liang. Are residues in a protein folding nucleus evolutionary conserved? J. Mol. Biol. (2004), 335, 869-880 Click Here for PDF	Jenny Gu
05/17/2004	Tramontano and Morea. Assessment of Homology-Based Prediction in CASP5. PROTEINS: Structure, Function , and Genetics (2003), 53, 352-368. Click here for PDF	Ilya Shindyalov
06/07/2004	Enshell-Seijffers, Denisov, Groisman, Smelyanski, Meyuhas, Gross, Denisova, Gershoni. The mapping and reconstitution of a conformational discontinuous B-cell epitope of HIV-1. J. Mol. Biol. (2003) 334, 87-101. Click here for PDF	Julia Ponomarenko
06/21/2004	Bartlett, Borkakoti, Thornton. Catalysing new reactions during evolution: economy of residues and mechanism. J. Mol. Biol. (2003) 331, 829-860. The Click here for PDF	Eric Scheeff