Season
Winter/Spring 2005
|
Date |
Subject |
Presented
by |
Slides |
|
1/31/05 |
Shakhnovich BE,
Deeds E, Delisi C, Shkhnovich E. Protein structure and evolutionary history
determine sequence space topology. Genome Research, 2005. Deeds EJ, Hennessey H, Shakhnovich EI. Prokaryotic phylogenies
inferred from protein structural domains. Genome Research, 2005. |
Phil Bourne |
|
|
2/28/05 |
Jordan IK, Kondrashov FA, Adzhubei IA, Wolf YI, Koonin EV,
Kondrashov AS, Sunyaev S. A universal trend of amino acid gain and loss in
protein evolution. Nature, 2005, 433, 633-638. |
Song Yang |
|
|
3/7/05 4PM |
James LC, Roversi P, Tawfik DS.
Antibody multispecificity mediated by conformational diversity. |
Julia
Ponomarenko |
|
|
3/14/05 |
Littler SJ, Hubbard SJ. Conservation of orientation and sequence
in protein domain-domain interactions. J Mol Biol, 2005, 345, 1265-1279. |
Jenny Gu |
|
|
3/21/05 |
Fernandez A, |
Jo-Lan Chung |
|
|
4/4/05 |
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen
JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas
MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch
C, Rogers YH, Smith HO. Environmental genome shotgun sequencing of the |
Kristine
Briedis |
|
|
4/11/05 |
Li H, Pellegrini M, Eisenberg D.
Detection of parallel functional modules by comparative analysis of genome
sequences. Nat Biotechnol. 2005, 23,
253-260. |
Philippe
Youkharibache |
|
|
4/18/05 |
Tompa P, Csermely P. The role of structural disorder in the
function of RNA and protein chaperones. FASEB J. 2004, 18, 1169-1175.
[Review] |
Stella
Veretnik |
|
|
4/25/05 |
1. 2. Krishna SS, |
Eric
Scheeff |
|
|
5/2/05 |
Sims GE, Choi I, Kim S. Protein conformational space in higher
order phi-psi maps. PNAS 2005, 102, 618-621. |
Apostol
Gramada |
|
|
5/16/05 |
Zhang Y, Skolnick J. TM-align: a protein structure alignment
algorithm based on the TM-score. Nucleic Acids Res. 2005, 33, 2302-2309. |
Ilya
Shindyalov |
|
|
5/23/05 |
Espadaler J, Aragüés R, Eswar N, Marti-Renom MA, Querol E, Avilés
FX, Sali A, Oliva B. Detecting remotely related proteins by their
interactions and sequence similarity. PNAS 2005, 102, 7151-7156. |
Sourav
Bandyopadhyay |
|
|
6/6/05 |
Sotomayor M, Corey DP, Schulten K. In search of the hair-cell
gating spring: Elastic properties of ankyrin and cadherin repeats. Structure
2005, 13, 669-682. |
Igor
Tsigelny |
|