Exercises:

Exercises marked by blue balls () are completed and ready for use. Those marked by red balls () are still under construction. Note that the "under construction" exercises are generally those from last year's class. They may give you an idea of what is coming, but the specifics of the assignment and questions will be changed.

Exercise 1 - Basics of Unix for BIMM 141. [Template] [Key]

Exercise 2 - Data Resources and Introduction to GCG. [Template] [Key]

Exercise 3 - "Dot Plots" and Introduction to Sequence Alignments. [Template] [Key]

Exercise 4 - Database Search via BLAST and Psi-BLAST [Template] [Key]

Exercise 5 - Genomes and Organisms [Template] [Key]

Exercise 6 - Folding of RNA or ssDNA Molecules. [Template] [Key]

Exercise 7 - Trees and Multiple Alignments [Template] [Key]

Exercise 8 - Protein motifs and structure: Pfam, SCOP. [Template] [Key]

Exercise 9 - Protein motifs and structure: RasMol. [Template] [Key]

Exercise 10 - SGI Computers and Insight. [Template] [Key]