A B C D E F G H I J L M N O P Q R S T U V W Z

A

ACCESS_CONSTRAINT - Static variable in interface edu.sdsc.grid.io.GeneralMetaData
 
ACCESS_DIRECTORY_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name for access in DIRECTORY_ACCESS_CONSTRAINT
account - Variable in class edu.sdsc.grid.io.GeneralFileSystem
The account info for connecting to the server.
actionPerformed(ActionEvent) - Method in class edu.sdsc.grid.gui.JargonTree
Defines the default ActionEvents.
add(MetaDataField) - Method in class edu.sdsc.grid.io.MetaDataGroup
Load the group's fields.
add(MetaDataGroup) - Static method in class edu.sdsc.grid.io.MetaDataSet
 
addCellEditorListener(CellEditorListener) - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Adds a CellEditorListener to the listener list.
addProtocol(Protocol) - Method in class edu.sdsc.grid.io.MetaDataField
Adds a metadata protocol for this field.
addProtocol(Protocol, String) - Method in class edu.sdsc.grid.io.MetaDataField
Adds an extensible name value, associated with a metadata protocol.
addRecord(MetaDataField, Object) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
addRecord(MetaDataField, int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
addRecord(MetaDataField, float) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
addRecord(MetaDataField, String) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
addRecord(MetaDataField, MetaDataTable) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
addRow(String[], int) - Method in class edu.sdsc.grid.io.MetaDataTable
Adds these values to this table, as the new last row.
addTreeModelListener(TreeModelListener) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Adds a listener for the TreeModelEvent posted after the tree changes.
AUDIT_ACTION_DESCRIPTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
audited action on data
AUDIT_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
audit comments for data
AUDIT_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
audit time stamp for data
AUDIT_USER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
audit user
AUDIT_USER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
audit user domain
AUDIT_USER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for audited suer
authenticationScheme - Variable in class edu.sdsc.grid.io.irods.IRODSAccount
The iRODS authorization scheme.
available() - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Returns the number of bytes that can be read (or skipped over) from this input stream without blocking by the next caller of a method for this input stream.
available() - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Returns the number of bytes that can be read from this file input stream without blocking.
available() - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Returns the number of bytes that can be read from this file input stream without blocking.
available() - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Returns the number of bytes that can be read from this file input stream without blocking.

B

backup(String) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Sync a container.
backup(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Backup a data object.
Base64 - Class in edu.sdsc.grid.io
Routines for converting between Strings of base64-encoded data and arrays of binary data.
BETWEEN - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"between" where the metadata value is between the two conditional values, lexicographical compare for strings.
BinaryDataFormat - Class in edu.sdsc.grid.io
The BinaryDataFormat class describes the byte order and primitive data type sizes for binary numeric data.
BinaryDataFormat() - Constructor for class edu.sdsc.grid.io.BinaryDataFormat
Constructs a binary data format description with initial values set to match the attributes of the host.
BinaryDataFormat(BinaryDataFormat) - Constructor for class edu.sdsc.grid.io.BinaryDataFormat
Constructs a binary data format description with initial values copied from the given binary data format.
BUFFER_MAX_SIZE - Static variable in class edu.sdsc.grid.io.GeneralFile
Default buffer size used for copyTo and copyFrom methods.
BULK_PHY_MOVE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
BULK_PHY_MOVE_INTO_CONTAINER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
BULK_REGISTER_REPLICATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 

C

C_BULK_INSERT_UDEF_META_DATA_FOR_COLL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_ACL_INHERITANCE_BIT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_ACL_INHERITANCE_BIT_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_ACL_INHERITANCE_BIT_RECUR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_ACL_INHERITANCE_BIT_RECUR_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_COLL_OWNER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_COLL_OWNER_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_MODIFY_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_USER_DEFINED_COLL_INTEGER_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CHANGE_USER_DEFINED_COLL_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_COPY_ANNOTATIONS_FROM_COLL_TO_COLL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_COPY_META_DATA_FROM_COLL_TO_COLL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_COPY_META_DATA_FROM_DATA_TO_COLL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_CREATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_DELETE_ANNOTATIONS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_DELETE_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_DELETE_CONTAINER_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_DELETE_MULTI_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_DELETE_USER_DEFINED_ATTR_VAL_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_DELETE_USER_DEFINED_COLL_INTEGER_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_DELETE_USER_DEFINED_COLL_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_INSERT_ANNOTATIONS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_INSERT_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_INSERT_CONTAINER_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_INSERT_LINK - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_INSERT_MULTI_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_INSERT_USER_DEFINED_COLL_INTEGER_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_INSERT_USER_DEFINED_COLL_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_MODIFY_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_MODIFY_MULTI_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_MOVE_COLL_TO_NEWCOLL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_MOVE_COLL_TO_TRASH - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_TICKET - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
C_UPDATE_ANNOTATIONS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
cancelCellEditing() - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Does nothing.
canRead() - Method in class edu.sdsc.grid.io.GeneralFile
Tests whether the application can read the file denoted by this abstract pathname.
canRead() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether the application can read the file denoted by this abstract pathname.
canRead() - Method in class edu.sdsc.grid.io.local.LocalFile
Tests whether the application can read the file denoted by this abstract pathname.
canRead() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests whether the application can read from the container denoted by this abstract pathname.
canRead() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the application can read the file denoted by this abstract pathname.
canWrite() - Method in class edu.sdsc.grid.io.GeneralFile
Tests whether the application can modify to the file denoted by this abstract pathname.
canWrite() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether the application can modify to the file denoted by this abstract pathname.
canWrite() - Method in class edu.sdsc.grid.io.local.LocalFile
Tests whether the application can modify to the file denoted by this abstract pathname.
canWrite() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests whether the application can modify to the container denoted by this abstract pathname.
canWrite() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the application can modify to the file denoted by this abstract pathname.
castToByte(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToByte(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToDouble(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToDouble(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToFloat(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToFloat(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToInt(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToInt(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToLong(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToLong(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToLongDouble(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToLongDouble(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToLongLong(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToLongLong(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToShort(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToShort(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedInt(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedInt(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedLong(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedLong(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedLongLong(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedLongLong(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedShort(byte[]) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
castToUnsignedShort(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Casts bytes from the given byte array into a value of the type and returns it.
certificateAuthority - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The certificate authority (CA) list.
changePermissions(String, String, boolean) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Change the permissions for this IRODSFile.
changePermissions(String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Change the permissions for this SRBFile.
changePermissions(String, String, String, boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Change the permissions for this SRBFile.
changeSubList(int) - Method in class edu.sdsc.grid.gui.SelectionChooser
Changes the displayed fields when a new group is chosen.
CHAR - Static variable in class edu.sdsc.grid.io.Host
A language primitive signed or unsigned char.
checksum() - Method in class edu.sdsc.grid.io.GeneralFile
If this abstract pathname refers to a file (and not a directory,) return the checksum of the file.
checksum() - Method in class edu.sdsc.grid.io.srb.SRBFile
Checksum a SRB data file.
checksum(boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Checksum a SRB data file.
clause - Variable in class edu.sdsc.grid.gui.SelectionChooser
The part of a query that this panel represents, such as a MetaDataSelection or MetaDataCondition.
clientMcatZone - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The client mcat zone.
clone() - Method in class edu.sdsc.grid.io.GeneralAccount
 
clone() - Method in class edu.sdsc.grid.io.GeneralFileSystem
 
close() - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Closes this input stream and releases any system resources associated with the stream.
close() - Method in class edu.sdsc.grid.io.GeneralFileOutputStream
Closes this file output stream and releases any system resources associated with this stream.
close() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Closes this random access file stream and releases any system resources associated with the stream.
close() - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Closes this file input stream and releases any system resources associated with the stream.
close() - Method in class edu.sdsc.grid.io.irods.IRODSFileOutputStream
Closes this file output stream and releases any system resources associated with this stream.
close() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Closes the connection to the SRB file system.
close() - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Closes this random access file stream and releases any system resources associated with the stream.
close() - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Closes this file input stream and releases any system resources associated with the stream.
close() - Method in class edu.sdsc.grid.io.local.LocalFileOutputStream
Closes this file output stream and releases any system resources associated with this stream.
close() - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
Closes this random access file stream and releases any system resources associated with the stream.
close() - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Closes this file input stream and releases any system resources associated with the stream.
close() - Method in class edu.sdsc.grid.io.srb.SRBFileOutputStream
Closes this file output stream and releases any system resources associated with this stream.
close() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Closes the connection to the SRB file system.
close() - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Closes this random access file stream and releases any system resources associated with the stream.
COLL_ACCS_ACCESS_CONSTRAINT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
accs cons for finding coll access
COLL_ACCS_COLLECTION_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
coll name for finding coll access
COLL_ACCS_GRPUSER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
coll group user domain
COLL_ACCS_GRPUSER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
group user who has access to coll
COLL_ACCS_GRPUSER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
coll group user zone
COLL_ACCS_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
directory access id
COLL_ACCS_USER_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
directory access user id
COLL_ANNOTATION_USER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for coll annotator
COLL_MODIFY_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection modify_timestamp
COLL_OWNER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for collection owner
COLL_UDEF_MDATA_CREATE_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
COLL_UDEF_MDATA_CREATE_DATE
COLL_UDEF_MDATA_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-def metadata for coll mod
COMP_OBJ_USER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
comp obj user domain
COMP_OBJ_USER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
comp obj user name
COMP_OBJ_USER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for composite obj owner
compareTo(GeneralFile) - Method in class edu.sdsc.grid.io.GeneralFile
Compares two abstract pathnames lexicographically.
compareTo(Object) - Method in class edu.sdsc.grid.io.GeneralFile
Compares this abstract pathname to another object.
compareTo(GeneralFile) - Method in class edu.sdsc.grid.io.local.LocalFile
Compares two abstract pathnames lexicographically.
compareTo(Object) - Method in class edu.sdsc.grid.io.local.LocalFile
Compares this abstract pathname to another object.
compareTo(Object) - Method in class edu.sdsc.grid.io.MetaDataField
 
compareTo(Object) - Method in class edu.sdsc.grid.io.MetaDataGroup
 
compareTo(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Compares two containers lexicographically.
compareTo(Object) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Compares this container to another object.
completeDirectoryList - Variable in class edu.sdsc.grid.io.srb.SRBFile
For list() should the entire contents be listed, or just SRBFileSystem.DEFAULT_RECORDS_WANTED in number.
COMPOUND_RESOURCE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
compound resource name
ConditionChooser - Class in edu.sdsc.grid.gui
A gui component for choosing MetaDataConditions.
ConditionChooser() - Constructor for class edu.sdsc.grid.gui.ConditionChooser
Default chooser, displays the condition chooser with all the metadata groups and fields available.
ConditionChooser(MetaDataGroup[]) - Constructor for class edu.sdsc.grid.gui.ConditionChooser
Displays the condition chooser with the MetaDataGroups available determined by the groups array.
ConditionChooser(MetaDataField[]) - Constructor for class edu.sdsc.grid.gui.ConditionChooser
Constructs the ConditionChooser without seperating the fields by group.
CONTAINER_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
default container for collection
CONTAINER_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
container id - deprecated, not for external use.
CONTAINER_LOG_RESOURCE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
logical resource associated with a container
CONTAINER_MAX_SIZE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
maximum size of container
CONTAINER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
name of container
CONTAINER_REPLICATION_ENUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
container copy number
CONTAINER_RESOURCE_CLASS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
class of physical resource of container
CONTAINER_RESOURCE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
name of physical resource of container
CONTAINER_SIZE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
current size of container
copyDouble(double, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyDouble(double, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyFloat(float, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyFloat(double, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyFloat(float, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyFloat(double, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyFrom(GeneralFile) - Method in class edu.sdsc.grid.io.GeneralFile
Copies this file to another file.
copyFrom(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.GeneralFile
Copies this file to another file.
copyFrom(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Copies this file to another file.
copyFrom(GeneralFile) - Method in class edu.sdsc.grid.io.local.LocalFile
Copies this file to another file.
copyFrom(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.local.LocalFile
Copies this file to another file.
copyFrom(GeneralFile, boolean, boolean) - Method in class edu.sdsc.grid.io.srb.SRBContainer
 
copyFrom(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Copies this file to another file.
copyFrom(GeneralFile, boolean, boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Copies this file to another file.
copyFromLocal(LocalFile) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Deprecated. Superseded by copyFrom( GeneralFile ). This single new method replaces all the other older copyFrom...() methods. It functions in the same manner as those old methods, but can except any GeneralFile. It also fixes some bugs in those methods.
copyFromLocal(String) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Deprecated. Superseded by copyFrom( GeneralFile ). This single new method replaces all the other older copyFrom...() methods. It functions in the same manner as those old methods, but can except any GeneralFile. It also fixes some bugs in those methods.
copyInt(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyInt(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyInt(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyInt(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyInt(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyInt(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyInt(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyInt(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLong(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongDouble(double, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongDouble(double, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyLongLong(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyShort(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyTo(GeneralFile) - Method in class edu.sdsc.grid.io.GeneralFile
Copies this file to another file.
copyTo(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.GeneralFile
Copies this file to another file.
copyTo(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Copies this file to another file.
copyTo(GeneralFile) - Method in class edu.sdsc.grid.io.local.LocalFile
Copies this file to another file.
copyTo(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.local.LocalFile
Copies this file to another file.
copyTo(GeneralFile, boolean, boolean) - Method in class edu.sdsc.grid.io.srb.SRBContainer
 
copyTo(GeneralFile, boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Copies this file to another file.
copyTo(GeneralFile, boolean, boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Copies this file to another file.
copyToLocal(LocalFile) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Deprecated. Superseded by copyFrom( GeneralFile ). This single new method replaces all the other older copyFrom...() methods. It functions in the same manner as those old methods, but can except any GeneralFile. It also fixes some bugs in those methods.
copyToLocal(String) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Deprecated. Superseded by copyFrom( GeneralFile ). This single new method replaces all the other older copyFrom...() methods. It functions in the same manner as those old methods, but can except any GeneralFile. It also fixes some bugs in those methods.
copyToRemote(RemoteFile) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Deprecated. Superseded by copyFrom( GeneralFile ). This single new method replaces all the other older copyFrom...() methods. It functions in the same manner as those old methods, but can except any GeneralFile. It also fixes some bugs in those methods.
copyUnsignedInt(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedInt(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedInt(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedInt(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedInt(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedInt(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedInt(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedInt(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLong(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedLongLong(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(byte, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(short, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(int, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(long, byte[]) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(byte, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(short, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(int, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
copyUnsignedShort(long, byte[], int) - Static method in class edu.sdsc.grid.io.Host
Copies the given value of the type into the given byte array.
createNewFile() - Method in class edu.sdsc.grid.io.GeneralFile
Atomically creates a new, empty file named by this abstract pathname if and only if a file with this name does not yet exist.
createNewFile() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Atomically creates a new, empty file named by this abstract pathname if and only if a file with this name does not yet exist.
createNewFile() - Method in class edu.sdsc.grid.io.local.LocalFile
Atomically creates a new, empty file named by this abstract pathname if and only if a file with this name does not yet exist.
createNewFile() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Atomically creates a new, empty container named by this abstract pathname if and only if a container with this name does not yet exist.
createNewFile() - Method in class edu.sdsc.grid.io.srb.SRBFile
Atomically creates a new, empty file named by this abstract pathname if and only if a file with this name does not yet exist.
createTempFile(String, String) - Static method in class edu.sdsc.grid.io.GeneralFile
Deprecated. Doesn't always work without existing GeneralFile. Instead use GeneralFile.createTempFile(String, String, GeneralFile)
createTempFile(String, String, GeneralFile) - Static method in class edu.sdsc.grid.io.GeneralFile
Creates a new empty file in the specified directory, using the given prefix and suffix strings to generate its name.
createTempFile(String, String, GeneralFile) - Static method in class edu.sdsc.grid.io.irods.IRODSFile
Creates a new empty file in the specified directory, using the given prefix and suffix strings to generate its name.
createTempFile(String, String) - Static method in class edu.sdsc.grid.io.local.LocalFile
Creates an empty file in the default temporary-file directory, using the given prefix and suffix to generate its name.
createTempFile(String, String, GeneralFile) - Static method in class edu.sdsc.grid.io.local.LocalFile
Creates a new empty file in the specified directory, using the given prefix and suffix strings to generate its name.
createTempFile(String, String) - Static method in class edu.sdsc.grid.io.srb.SRBContainer
Creates an empty file in the default temporary-file directory, using the given prefix and suffix to generate its name.
createTempFile(String, String, GeneralFile) - Static method in class edu.sdsc.grid.io.srb.SRBContainer
Creates a new empty file in the specified directory, using the given prefix and suffix strings to generate its name.
createTempFile(String, String, GeneralFile) - Static method in class edu.sdsc.grid.io.srb.SRBFile
Creates a new empty file in the specified directory, using the given prefix and suffix strings to generate its name.
CREATION_DATE - Static variable in interface edu.sdsc.grid.io.GeneralMetaData
 
CURATOR_ACTION_TYPE_MAX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
CURATOR_ACTION_TYPE_MIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
CURRENT_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
Informs the server which zone you intend to use

D

D_APPEND_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_AUDIT_FAILURE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_AUDIT_SUCCESS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_BULK_INSERT_UDEF_META_DATA_FOR_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_BULK_INSERT_UDEF_META_DATA_FOR_MANY_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_BULKINGEST - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_COLL_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_DIRTY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_DNAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_DPATH - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_GROUP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_INCOLL_OWNER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_INCOLL_OWNER_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_INCOLL_OWNER_RECUR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_INCOLL_OWNER_RECUR_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_LAST_ACCS_TIME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_MODIFY_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_OFFSET - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_OWNER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_OWNER_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_REPLNUM_VERNUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_SCHEMA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_SIZE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_USER_DEFINED_INTEGER_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CHANGE_VERSION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_CREATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_MODIFY_CMPD_PATH_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_MODIFY_IS_DIRTY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_MODIFY_LAST_ACCS_TIME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_MODIFY_MODIFY_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_MODIFY_OFFSET - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_MODIFY_SIZE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_MODIFY_SIZE_AND_DIRTY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_SET_LAST_ACCS_TIME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COMPOUND_SET_MODIFY_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CONTAINER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COPY_ANNOTATIONS_FROM_DATA_TO_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COPY_META_DATA_FROM_COLL_TO_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COPY_META_DATA_FROM_CONTAINER_TO_NEW_CONTAINER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_COPY_META_DATA_FROM_DATA_TO_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_CREATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_ACCS_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_ALIAS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_ALL_FROM_CONTAINER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_ANNOTATIONS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_CLASS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_COLL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_COLL_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_COLL_ACCS_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_COMPOUND - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_DOMN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_FROM_EXTMD_TABLE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_GUID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_INCOLL_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_INCOLL_ACCS_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_INCOLL_ACCS_RECUR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_INCOLL_ACCS_RECUR_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_INDEX_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_INDEX_FOR_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_INDEX_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_LOCK - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_METHOD_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_METHOD_FOR_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_METHOD_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_MULTI_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_ONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_STRUCT_METADATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_SUBCOMPOUND - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_USER_DEFINED_ATTR_VAL_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_USER_DEFINED_INTEGER_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETE_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_DELETECONT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_EXTRACT_TEMPLATE_METADATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_ACCS_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_ALIAS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_ANNOTATIONS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_AUDIT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_AUDITFLAG - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_CLASS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_COLL_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_COLL_ACCS_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_DCHECKSUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_DHIDE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_DOMN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_EXTERNAL_STRUCT_METADATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_GUID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INCOLL_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INCOLL_ACCS_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INCOLL_ACCS_RECUR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INCOLL_ACCS_RECUR_BY_CURATOR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INDEX_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INDEX_FOR_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INDEX_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INTERNAL_STRUCT_METADATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_INTO_EXTMD_TABLE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_LINK - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_LOCK - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_METHOD_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_METHOD_FOR_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_METHOD_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_MULTI_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_USER_DEFINED_INTEGER_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_INSERT_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_LINK - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_MODIFY_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_MODIFY_IN_EXTMD_TABLE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_MODIFY_MULTI_ATTR - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_MOVE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_MOVE_DATA_TO_NEWCOLL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_MOVE_DATA_TO_TRASH - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_READ - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_REPLICATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_TICKET - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_ANNOTATIONS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_COLL_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_CONTAINER_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_DCOMPRESSED - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_DENCRYPTED - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_DEXPIRE_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_DEXPIRE_DATE_2 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPDATE_PIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_UPGRADE_LOCK - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
D_WRITE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
DATA_ACCS_GRPUSER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data group user domain
DATA_ACCS_GRPUSER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
group user who has access to data
DATA_ACCS_GRPUSER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data group user zone
DATA_ACCS_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data access id
DATA_ACCS_USER_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data access user id
DATA_ANNOTATION_USER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for data annotator
DATA_LOCK_OWNER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for data lock owner
DATA_OWNER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for data owner
DATA_PIN_OWNER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for data pin owner
DATA_TYPE_EXTENDERS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
extender list for data type
DATA_TYPE_FOR_CONTAINER_FOR_COLLECTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data type for container associated with collection
DATA_TYPE_MIME_STRING - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
mime string for data type
DATA_UDEF_MDATA_CREATE_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
DATA_UDEF_MDATA_CREATE_DATE
DATA_UDEF_MDATA_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-def metadata for data mod
DATE - Static variable in class edu.sdsc.grid.io.MetaDataField
The value type for the field.
DC_COLLECTION - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Collection Name same as Collection Name
DC_CONTRIBUTOR_ADDR - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Contributro Address
DC_CONTRIBUTOR_AFFILIATION - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Contributor Affiliation
DC_CONTRIBUTOR_EMAIL - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Contributor Email
DC_CONTRIBUTOR_NAME - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Contributor Name.
DC_CONTRIBUTOR_PHONE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Contributor Phone
DC_CONTRIBUTOR_TYPE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Contributor Type: Eg.
DC_CONTRIBUTOR_WEB - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Contributor Web Address
DC_COVERAGE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Coverage Information
DC_COVERAGE_TYPE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Coverage Type
DC_DATA_NAME - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
Dublin Core File Name same as file name
DC_DESCRIPTION - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Description
DC_DESCRIPTION_TYPE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Type of Description
DC_LANGUAGE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Language of the Object
DC_PUBLISHER - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Publisher Name
DC_PUBLISHER_ADDR - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Publisher Address
DC_RELATED_DATA - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Date Related to 152,153
DC_RELATED_DATA_DESCRIPTION - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Related Data Description
DC_RELATED_DIRECTORY - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC:
DC_RELATION_TYPE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Relation with another Object in 170,171
DC_RIGHTS - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Rights Information
DC_RIGHTS_TYPE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Rights Type
DC_SOURCE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Source Name
DC_SOURCE_TYPE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Type of the Source
DC_SUBJECT_CLASS - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Subject Classification
DC_SUBJECT_NAME - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Subject
DC_TITLE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Title of the Object
DC_TYPE - Static variable in interface edu.sdsc.grid.io.DublinCoreMetaData
DC: Type of the Object
DEBUG - Static variable in class edu.sdsc.grid.io.GeneralFileSystem
A positive debug value turns on debugging.
DEFAULT_RECORDS_WANTED - Static variable in class edu.sdsc.grid.io.GeneralFileSystem
Default number of records returned by a query
defaultStorageResource - Variable in class edu.sdsc.grid.io.irods.IRODSAccount
The default storage resource.
defaultStorageResource - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The default storage resource.
DEFINABLE_METADATA_FOR_DIRECTORIES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
DEFINABLE_METADATA_FOR_DIRECTORIES0 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-defined string metadata
DEFINABLE_METADATA_FOR_FILES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
DEFINABLE_METADATA_FOR_FILES0 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-defined string metadata
DEFINABLE_METADATA_FOR_RESOURCES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
definable metadata for resources
DEFINABLE_METADATA_FOR_RESOURCES0 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
DEFINABLE_METADATA_FOR_USERS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
definable user metadata
DEFINABLE_METADATA_FOR_USERS0 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
definable user metadata string 0
DEL_COLLECTION_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection_id of deleted data object
DEL_DATA_COMMENT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
comments on deleted data object
delete() - Method in class edu.sdsc.grid.io.GeneralFile
Deletes the file or directory denoted by this abstract pathname.
delete() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Deletes the file or directory denoted by this abstract pathname.
delete() - Method in class edu.sdsc.grid.io.local.LocalFile
Deletes the file or directory denoted by this abstract pathname.
delete() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Deletes the container denoted by this SRBContainer.
delete(boolean) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Deletes the file or directory denoted by this abstract pathname.
delete() - Method in class edu.sdsc.grid.io.srb.SRBFile
Deletes the file or directory denoted by this abstract pathname.
delete(boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Deletes the file or directory denoted by this abstract pathname.
DELETE_DIRECTORY_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection_name of deleted data object
DELETE_FILE_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data_id of deleted data object
DELETE_FILE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data_name of deleted data object
DELETE_FILE_REPLICATION_ENUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
repl_enum of deleted data object
DELETE_MODIFICATION_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
timestamp of deleted data object
deleteOnExit() - Method in class edu.sdsc.grid.io.GeneralFile
Requests that the file or directory denoted by this abstract pathname be deleted when the virtual machine terminates.
deleteOnExit() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Requests that the file or directory denoted by this abstract pathname be deleted when the virtual machine terminates.
deleteOnExit() - Method in class edu.sdsc.grid.io.local.LocalFile
Requests that the file or directory denoted by this abstract pathname be deleted when the virtual machine terminates.
deleteOnExit() - Method in class edu.sdsc.grid.io.srb.SRBFile
Requests that the file or directory denoted by this abstract pathname be deleted when the virtual machine terminates.
description - Variable in class edu.sdsc.grid.io.MetaDataGroup
 
destinations - Variable in class edu.sdsc.grid.gui.TransferStatusPanel
 
directory - Variable in class edu.sdsc.grid.io.GeneralFile
Standardized, absolute directory string
DIRECTORY_ACCESS_CONSTRAINT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
access on collection in ACCESS_DIRECTORY_NAME
DIRECTORY_ANNOTATION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
annotation on data
DIRECTORY_ANNOTATION_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
time of annotation
DIRECTORY_ANNOTATION_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
some user-defined type for the annotation
DIRECTORY_ANNOTATION_USERDOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
domain of annotator
DIRECTORY_ANNOTATION_USERNAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
name of annotator
DIRECTORY_COMMENTS - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
DIRECTORY_CONTAINER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
fake
DIRECTORY_CREATE_DATE - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
DIRECTORY_CREATE_TIMESTAMP - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
DIRECTORY_INHERITANCE - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
DIRECTORY_LINK_NUMBER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
fake
DIRECTORY_MODIFY_DATE - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
DIRECTORY_NAME - Static variable in interface edu.sdsc.grid.io.StandardMetaData
 
DIRECTORY_OWNER - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
DIRECTORY_OWNER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection owner domain
DIRECTORY_OWNER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection owner name
DIRECTORY_OWNER_ZONE - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
DirectoryMetaData - Interface in edu.sdsc.grid.io
The metadata naming interface for directory metadata.
domainName - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The mdas domain home of the user.
DOUBLE - Static variable in class edu.sdsc.grid.io.Host
A language primitive double.
doubleValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary double value contained in the byte array, and described by this binary data format, into a double in the host's native binary data format.
doubleValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary double value contained in the byte array, and described by this binary data format, into a double in the host's native binary data format.
doubleValues(byte[], double[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary double values contained in the byte array, and described by this binary data format, into an array of double in the host's native binary data format.
DublinCoreMetaData - Interface in edu.sdsc.grid.io
The metadata naming interface for dublin core metadata.

E

edu.sdsc.grid.gui - package edu.sdsc.grid.gui
 
edu.sdsc.grid.io - package edu.sdsc.grid.io
 
edu.sdsc.grid.io.irods - package edu.sdsc.grid.io.irods
 
edu.sdsc.grid.io.local - package edu.sdsc.grid.io.local
 
edu.sdsc.grid.io.srb - package edu.sdsc.grid.io.srb
 
encodeDouble(double, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the double value, in the host's native binary data format, into a byte array containing bytes that make up an double described by this binary data format.
encodeDouble(double, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the double value, in the host's native binary data format, into a byte array containing bytes that make up an double described by this binary data format.
encodeDoubles(double[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of double values, in the host's native binary data format, into a byte array containing bytes that make up each double described by this binary data format.
encodeFloat(float, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the float value, in the host's native binary data format, into a byte array containing bytes that make up an float described by this binary data format.
encodeFloat(double, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the float value, in the host's native binary data format, into a byte array containing bytes that make up an float described by this binary data format.
encodeFloat(float, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the float value, in the host's native binary data format, into a byte array containing bytes that make up an float described by this binary data format.
encodeFloat(double, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the float value, in the host's native binary data format, into a byte array containing bytes that make up an float described by this binary data format.
encodeFloats(float[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of float values, in the host's native binary data format, into a byte array containing bytes that make up each float described by this binary data format.
encodeInt(int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the integer value, in the host's native binary data format, into a byte array containing bytes that make up an integer described by this binary data format.
encodeInt(int, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the integer value, in the host's native binary data format, into a byte array containing bytes that make up an integer described by this binary data format.
encodeInts(int[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of int values, in the host's native binary data format, into a byte array containing bytes that make up each int described by this binary data format.
encodeLong(long, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the long value, in the host's native binary data format, into a byte array containing bytes that make up an long described by this binary data format.
encodeLong(long, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the long value, in the host's native binary data format, into a byte array containing bytes that make up an long described by this binary data format.
encodeLongDouble(double, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the long double value, in the host's native binary data format, into a byte array containing bytes that make up an long double described by this binary data format.
encodeLongDouble(double, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the long double value, in the host's native binary data format, into a byte array containing bytes that make up an long double described by this binary data format.
encodeLongDoubles(double[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of long double values, in the host's native binary data format, into a byte array containing bytes that make up each long double described by this binary data format.
encodeLongLong(long, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the long long value, in the host's native binary data format, into a byte array containing bytes that make up an long long described by this binary data format.
encodeLongLong(long, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the long long value, in the host's native binary data format, into a byte array containing bytes that make up an long long described by this binary data format.
encodeLongLongs(long[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of long long values, in the host's native binary data format, into a byte array containing bytes that make up each long long described by this binary data format.
encodeLongs(long[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of long values, in the host's native binary data format, into a byte array containing bytes that make up each long described by this binary data format.
encodeShort(short, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the short value, in the host's native binary data format, into a byte array containing bytes that make up an short described by this binary data format.
encodeShort(int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the short value, in the host's native binary data format, into a byte array containing bytes that make up an short described by this binary data format.
encodeShort(short, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the short value, in the host's native binary data format, into a byte array containing bytes that make up an short described by this binary data format.
encodeShort(int, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the short value, in the host's native binary data format, into a byte array containing bytes that make up an short described by this binary data format.
encodeShorts(short[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of short values, in the host's native binary data format, into a byte array containing bytes that make up each short described by this binary data format.
encodeUnsignedInt(int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned integer value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned integer described by this binary data format.
encodeUnsignedInt(long, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned integer value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned integer described by this binary data format.
encodeUnsignedInt(int, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned integer value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned integer described by this binary data format.
encodeUnsignedInt(long, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned integer value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned integer described by this binary data format.
encodeUnsignedInts(int[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of unsigned int values, in the host's native binary data format, into a byte array containing bytes that make up each unsigned int described by this binary data format.
encodeUnsignedLong(long, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned long value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned long described by this binary data format.
encodeUnsignedLong(long, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned long value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned long described by this binary data format.
encodeUnsignedLongLong(long, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned long long value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned long long described by this binary data format.
encodeUnsignedLongLong(long, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned long long value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned long long described by this binary data format.
encodeUnsignedLongLongs(long[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of unsigned long long values, in the host's native binary data format, into a byte array containing bytes that make up each unsigned long long described by this binary data format.
encodeUnsignedLongs(long[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of unsigned long values, in the host's native binary data format, into a byte array containing bytes that make up each unsigned long described by this binary data format.
encodeUnsignedShort(short, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned short value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned short described by this binary data format.
encodeUnsignedShort(int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned short value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned short described by this binary data format.
encodeUnsignedShort(short, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned short value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned short described by this binary data format.
encodeUnsignedShort(int, byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes the unsigned short value, in the host's native binary data format, into a byte array containing bytes that make up an unsigned short described by this binary data format.
encodeUnsignedShorts(short[], int, byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Encodes an array of unsigned short values, in the host's native binary data format, into a byte array containing bytes that make up each unsigned short described by this binary data format.
ENCRYPT1 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
Encrypted text password.
ENUM - Static variable in class edu.sdsc.grid.io.MetaDataCondition
The value style for the field.
Styles include: SCALAR, RANGEPAIR, ENUM, TABLE.
EQUAL - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"=" where the metadata value exactly equals the conditional value.
equals(BinaryDataFormat) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Indicates whether another binary data format object is equal to this.
equals(Object) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Indicates whether another binary data format object is equal to this.
equals(Object) - Method in class edu.sdsc.grid.io.GeneralAccount
 
equals(Object) - Method in class edu.sdsc.grid.io.GeneralFile
Tests this abstract pathname for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.GeneralFileSystem
Tests this filesystem object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Tests this local file system account object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests this abstract pathname for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Tests this filesystem object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.irods.IRODSProtocol
If and only if the object is an instance of IRODSProtocol.
equals(Object) - Method in class edu.sdsc.grid.io.local.LocalAccount
Tests this local file system account object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.local.LocalFile
Tests this abstract pathname for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.local.LocalFileSystem
Tests this filesystem object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.MetaDataCondition
Tests this MetaDataCondition object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.MetaDataField
Tests this MetaDataField object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Tests this abstract pathname for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.MetaDataSelect
Tests this MetaDataSelect object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.MetaDataTable
 
equals(Object) - Method in class edu.sdsc.grid.io.Protocol
The standard java equals(Object), but it is abstract to insure all subclasses will implement it.
equals(Object) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Tests this account object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests this abstract pathname for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests this abstract pathname for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Tests this filesystem object for equality with the given object.
equals(Object) - Method in class edu.sdsc.grid.io.srb.SRBProtocol
If and only if the object is an instance of SRBProtocol.
execFile - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The exec file.
executeProxyCommand(String, String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Proxy Operation that executes a command.
executeProxyCommand(String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Proxy Operation that executes a command.
executeProxyCommand(String, String, String, int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Proxy Operation that executes a command.
executeProxyCommand(String, String, String, String, int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Proxy Operation that executes a command.
exists() - Method in class edu.sdsc.grid.io.GeneralFile
Tests whether the file denoted by this abstract pathname exists.
exists() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether the file denoted by this abstract pathname exists.
exists() - Method in class edu.sdsc.grid.io.local.LocalFile
Tests whether the file denoted by this abstract pathname exists.
exists() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests whether the container denoted by this abstract pathname exists.
exists() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the file denoted by this abstract pathname exists.
EXTENSIBLE_ATTR_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
extensible attribute comments
EXTENSIBLE_ATTR_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
extensible attribute name
EXTENSIBLE_ATTR_OUTSIDE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
extensible attribute outside name
EXTENSIBLE_SCHEMA_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
extensible schema name
EXTENSIBLE_TABLE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
extensible table name

F

fd - Variable in class edu.sdsc.grid.io.GeneralFileInputStream
Holds the file descriptor information used by this stream.
fd - Variable in class edu.sdsc.grid.io.GeneralFileOutputStream
Holds the file descriptor information used by this stream.
fd - Variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Holds the server information used by this file.
fields - Variable in class edu.sdsc.grid.gui.SelectionChooser
The list of MetaDataFields, used to find query attributes.
fields - Variable in class edu.sdsc.grid.io.MetaDataGroup
 
fields - Variable in class edu.sdsc.grid.io.MetaDataRecordList
Stores the descriptions and names of the related fields for all the values returned.
file - Variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Has this random access file been closed.
FILE_ACCESS_DATA_ID - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_ACCESS_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
MCAT's internal Id for Access Type
FILE_ACCESS_LIST - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
access list for data
FILE_ACCESS_NAME - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_ACCESS_PRIVILEGE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
access privilege on data
FILE_ACCESS_TYPE - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_ACCESS_USER_ID - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_ANNOTATION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
annotation on data
FILE_ANNOTATION_POSITION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
some user-defined location for the annotation
FILE_ANNOTATION_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
time of annotation
FILE_ANNOTATION_USERDOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
domain of annotator
FILE_ANNOTATION_USERNAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
name of annotator
FILE_AUDITFLAG - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
flag to see whether the data needs to be audited
FILE_CATALOG - Static variable in class edu.sdsc.grid.io.srb.SRBFile
A SRB catalog type.
FILE_CHECKSUM - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_CLASS_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
classifcation name for data different from FILE_TYPE_NAME
FILE_CLASS_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
classification type
FILE_COMMENTS - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_COMMENTS_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
time stamp for comments on data
FILE_CONTAINER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
fake
FILE_EXPIRE_DATE_2 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
another expiry time_stamp for data as per george req
FILE_EXPIRY - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_EXPIRY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
expiry timestamp for the data replica itself
FILE_GROUP_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
internal collection id
FILE_GROUP_NAME - Static variable in interface edu.sdsc.grid.io.GeneralMetaData
 
FILE_HIDE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
setting it more than 0 hides the data
FILE_ICON - Static variable in class edu.sdsc.grid.gui.JargonTreeModel
The icon displayed for file nodes, leaf nodes.
FILE_IS_COMPRESSED - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
if data is compressed tell here how?
FILE_IS_DELETED - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data liveness
FILE_IS_ENCRYPTED - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
if data is encrypted tell here how? not the password
FILE_LAST_ACCESS_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data last access time stamp
FILE_LOCK_DESCRIPTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
FILE_LOCK_EXPIRY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
lock expory dtimestamp
FILE_LOCK_NUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
dataset lock
FILE_LOCK_OWNER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
dataset lock owner domain
FILE_LOCK_OWNER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
dataset lock owner name
FILE_MAP_ID - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_NAME - Static variable in interface edu.sdsc.grid.io.StandardMetaData
 
FILE_OWNER_ZONE - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_PIN_EXPIRY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
expiry timestamp for the pin
FILE_PIN_OWNER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
domain of the pin owner
FILE_PIN_OWNER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
owner of the pin
FILE_PIN_VAL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data replica pinned from being moved if set greater than 0
FILE_REPLICA_NUM - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_REPLICA_STATUS - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_REPLICATION_ENUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
replica copy number
FILE_RESOURCE_GROUP - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_SEG_NUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
file seg num
FILE_STATUS - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_TYPE - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
FILE_TYPE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
file or data type name
FILE_VER_NUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
dataset version number
FILE_VERSION - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
fileCopyStatus() - Method in class edu.sdsc.grid.io.srb.SRBFile
The number of bytes transfered so far by a currently executing SRBFile.copyTo/copyFrom command.
FileFactory - Class in edu.sdsc.grid.io
Operations include creating appropriately typed GeneralFile and GeneralRandomAccessFile objects.
FileFactory() - Constructor for class edu.sdsc.grid.io.FileFactory
 
fileFormat - Variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Holds the file's binary data format.
FileMetaData - Interface in edu.sdsc.grid.io
The metadata naming interface for file metadata.
fileName - Variable in class edu.sdsc.grid.io.GeneralFile
Standardized filename
fileNameLabel - Variable in class edu.sdsc.grid.gui.TransferStatusPanel
 
fileSystem - Variable in class edu.sdsc.grid.io.GeneralFile
Holds the server information used by this file.
fileSystem - Variable in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Holds the server connection used by this stream.
fileSystem - Variable in class edu.sdsc.grid.io.irods.IRODSFileOutputStream
Holds the server connection used by this stream.
fileSystem - Variable in class edu.sdsc.grid.io.srb.SRBFileInputStream
Holds the server connection used by this stream.
fileSystem - Variable in class edu.sdsc.grid.io.srb.SRBFileOutputStream
Holds the server connection used by this stream.
finalize() - Method in class edu.sdsc.grid.gui.ConditionChooser
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.gui.JargonTree
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.gui.SelectionChooser
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Destroys a binary data format description.
finalize() - Method in class edu.sdsc.grid.io.GeneralAccount
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.GeneralFile
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Ensures that the close method of this file input stream is called when there are no more references to it.
finalize() - Method in class edu.sdsc.grid.io.GeneralFileOutputStream
Ensures that the close method of this file input stream is called when there are no more references to it.
finalize() - Method in class edu.sdsc.grid.io.GeneralFileSystem
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Finalize the object by closing the file.
finalize() - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.local.LocalFile
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Ensures that the close method of this file input stream is called when there are no more references to it.
finalize() - Method in class edu.sdsc.grid.io.local.LocalFileOutputStream
Ensures that the close method of this file input stream is called when there are no more references to it.
finalize() - Method in class edu.sdsc.grid.io.MetaDataCondition
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.MetaDataRecordList
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.RemoteAccount
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.srb.SRBFile
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Finalizes the object by explicitly letting go of each of its internally held values.
finalize() - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Finalizes the object by explicitly letting go of each of its internally held values.
fireTreeStructureChanged(Object) - Method in class edu.sdsc.grid.gui.JargonTreeModel
The only event raised by this model is TreeStructureChanged with the root as path, i.e.
firstQueryResult(String) - Method in class edu.sdsc.grid.io.GeneralFile
Queries metadata specific to this file object, selecting one metadata value, fieldName, and returns the first result of that query.
FLOAT - Static variable in class edu.sdsc.grid.io.Host
A language primitive float.
FLOAT - Static variable in class edu.sdsc.grid.io.MetaDataField
The value type for the field.
floatValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary float value contained in the byte array, and described by this binary data format, into a float in the host's native binary data format.
floatValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary float value contained in the byte array, and described by this binary data format, into a float in the host's native binary data format.
floatValues(byte[], float[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary float values contained in the byte array, and described by this binary data format, into an array of float in the host's native binary data format.
FOLDER_ICON - Static variable in class edu.sdsc.grid.gui.JargonTreeModel
The icon displayed for folder nodes, non-leaf nodes.
formatString(byte[], int, String, boolean) - Static method in class edu.sdsc.grid.io.Base64
Formats data into a nicely formatted base64 encoded String
FREE_SPACE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
free space
fromString(String) - Static method in class edu.sdsc.grid.io.Base64
Convert a base64-encoded String to binary data
FS_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
fs timestamp

G

GeneralAccount - Class in edu.sdsc.grid.io
An object to hold the user information used when connecting to a file system.
GeneralAccount(String) - Constructor for class edu.sdsc.grid.io.GeneralAccount
Constructs an object to hold the user information used when connecting to a file system.
GeneralFile - Class in edu.sdsc.grid.io
An abstract representation of file and directory pathnames.
GeneralFile(GeneralFileSystem, String, String) - Constructor for class edu.sdsc.grid.io.GeneralFile
Creates a new GeneralFile from a parent pathname string and a child pathname string.
GeneralFile(URI) - Constructor for class edu.sdsc.grid.io.GeneralFile
Creates a new GeneralFile instance by converting the given file: URI into an abstract pathname.
GeneralFileInputStream - Class in edu.sdsc.grid.io
A GeneralFileInputStream obtains input bytes from a file in a file system.
GeneralFileInputStream(GeneralFileSystem, String) - Constructor for class edu.sdsc.grid.io.GeneralFileInputStream
Creates a FileInputStream by opening a connection to an actual file, the file named by the path name name in the file system.
GeneralFileInputStream(GeneralFile) - Constructor for class edu.sdsc.grid.io.GeneralFileInputStream
Creates a FileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
GeneralFileOutputStream - Class in edu.sdsc.grid.io
A GeneralFileOutputStream writes bytes to a file in a file system.
GeneralFileOutputStream(GeneralFileSystem, String) - Constructor for class edu.sdsc.grid.io.GeneralFileOutputStream
Creates a FileOuputStream by opening a connection to an actual file, the file named by the path name name in the file system.
GeneralFileOutputStream(GeneralFile) - Constructor for class edu.sdsc.grid.io.GeneralFileOutputStream
Creates a FileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
GeneralFileSystem - Class in edu.sdsc.grid.io
The GeneralFileSystem class is the common superclass for connection implementations to any file system.
GeneralFileSystem() - Constructor for class edu.sdsc.grid.io.GeneralFileSystem
 
GeneralMetaData - Interface in edu.sdsc.grid.io
The metadata naming interface for general metadata.
GeneralRandomAccessFile - Class in edu.sdsc.grid.io
Instances of this class support I/O on random-access binary files.
GeneralRandomAccessFile(GeneralFile, String) - Constructor for class edu.sdsc.grid.io.GeneralRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, the file specified by the GeneralFile argument.
getAbsoluteFile() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the absolute form of this abstract pathname.
getAbsoluteFile() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the absolute form of this abstract pathname.
getAbsoluteFile() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Returns the absolute form of this abstract pathname.
getAbsolutePath() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the absolute pathname string of this abstract pathname.
getAbsolutePath() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the absolute pathname string of this abstract pathname.
getAccount() - Method in class edu.sdsc.grid.io.GeneralFileSystem
Returns a copy of the account object used by this GeneralFileSystem.
getAccount() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Returns the account used by this IRODSFileSystem.
getAccount() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Returns the account used by this SRBFileSystem.
getAllResults() - Method in class edu.sdsc.grid.io.local.LocalMetaDataRecordList
 
getAllResults(MetaDataRecordList[]) - Static method in class edu.sdsc.grid.io.MetaDataRecordList
Gets all of the query results of a particular query and returns them in a single array.
getAuthenticationScheme() - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Gets the iRODS options.
getAuthenticationScheme() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
 
getBinaryDataFormat() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Gets the current binary data format object describing data read from and written to the random access file.
getCanonicalFile() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the canonical form of this abstract pathname.
getCanonicalFile() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the canonical form of this abstract pathname.
getCanonicalFile() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Returns the canonical form of this abstract pathname.
getCanonicalPath() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the canonical pathname string of this abstract pathname.
getCanonicalPath() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Returns the canonical pathname string of this abstract pathname.
getCanonicalPath() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the canonical pathname string of this abstract pathname.
getCanonicalPath() - Method in class edu.sdsc.grid.io.srb.SRBFile
Returns the canonical pathname string of this abstract pathname.
getCatalogType() - Method in class edu.sdsc.grid.io.srb.SRBFile
 
getCellEditorValue() - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Returns the value currently being edited.
getCertificateAuthority() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Gets the locations of the GSI Certificate Authority (CA).
getChild(Object, int) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Returns the child of parent at index in the parent's child array.
getChildCount(Object) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Returns the number of children of parent.
getClause() - Method in class edu.sdsc.grid.gui.ConditionChooser
Returns the current values of this chooser's MetaDataCondition
getClause() - Method in class edu.sdsc.grid.gui.SelectionChooser
Returns the current clause of this chooser's MetaDataSelection
getColumnCount() - Method in class edu.sdsc.grid.io.MetaDataTable
 
getCompilerAlignment(int) - Static method in class edu.sdsc.grid.io.Host
Gets the alignment boundary, in bytes, imposed by the compiler for the type.
getContainerMaxSize() - Method in class edu.sdsc.grid.io.srb.SRBContainer
 
getCount() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns the length of the value list, if the style is an enum.
getDataType() - Method in class edu.sdsc.grid.io.irods.IRODSFile
 
getDataType() - Method in class edu.sdsc.grid.io.srb.SRBContainer
 
getDataType() - Method in class edu.sdsc.grid.io.srb.SRBFile
 
getDefaultStorageResource() - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Gets the default storage resource.
getDefaultStorageResource() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
 
getDefaultStorageResource() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Gets the default storage resource.
getDefaultStorageResource() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getDescription() - Method in class edu.sdsc.grid.io.MetaDataField
The description string may be displayed by a GUI.
getDescription() - Method in class edu.sdsc.grid.io.MetaDataGroup
This string may be displayed by a GUI.
getDescription() - Method in class edu.sdsc.grid.io.MetaDataValueEnum
This string may be displayed by a GUI.
getDestinations() - Method in class edu.sdsc.grid.gui.TransferStatusPanel
 
getDomainName() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Gets the domain name used by the client.
getDomainName() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getDoubleSize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Gets the number of bytes occupied by a double-precision float.
getExecFile() - Method in class edu.sdsc.grid.io.srb.SRBAccount
 
getExecFile() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getExtensibleName(Protocol) - Method in class edu.sdsc.grid.io.MetaDataField
 
getFD() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Returns the file descriptor associated with this stream.
getField(String) - Static method in class edu.sdsc.grid.io.irods.IRODSMetaDataSet
 
getField() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns the MetaDataGroup's field object describing the field in the condition.
getField(String) - Method in class edu.sdsc.grid.io.MetaDataGroup
Returns an object describing this field in the group.
getField(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the MetaDataField object describing the indicated field.
getField() - Method in class edu.sdsc.grid.io.MetaDataSelect
Returns the MetaDataField object describing the field selected by this object.
getField(String) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns the MetaDataField object associated with this fieldName string.
getFieldCount() - Method in class edu.sdsc.grid.io.MetaDataGroup
Returns the number of fields known by the group.
getFieldCount() - Method in class edu.sdsc.grid.io.MetaDataRecordList
Returns the number of fields for each record in the list.
getFieldIndex(String) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the index for the named field.
getFieldName() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns the field name in the condition.
getFieldName(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the field name for the indicated field.
getFieldName() - Method in class edu.sdsc.grid.io.MetaDataSelect
Returns the name of the field selected by this object.
getFields() - Method in class edu.sdsc.grid.io.MetaDataGroup
Returns all the fields in the group.
getFields(boolean) - Method in class edu.sdsc.grid.io.MetaDataGroup
 
getFields() - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the MetaDataFields for this record list.
getFieldType() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns the MetaDataGroup's field data type.
getFieldType(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the data type for the field's values.
getFile() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Returns the abstract filepath associated with this stream.
getFile() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the internal file object.
getFilePointer() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Returns the current offset in this file.
getFilePointer() - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Returns the current offset in this file.
getFilePointer() - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
Returns the current offset in this file.
getFilePointer() - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Returns the current offset in this file.
getFileSystem() - Method in class edu.sdsc.grid.io.GeneralFile
 
getFileSystem() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Returns the file system object for this file.
getFileSystem() - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Returns the irods file system object.
getFileSystem() - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Returns the irods file system object.
getFileSystem() - Method in class edu.sdsc.grid.io.srb.SRBFile
 
getFileSystem() - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Returns the srb file system object.
getFileSystem() - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Returns the srb file system object.
getFloatSize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Gets the number of bytes occupied by a single-precision float.
getFloatValue(int) - Method in class edu.sdsc.grid.io.MetaDataCondition
For a 'rangepair' style conditional, there are two values at indexes 0,0 and 0,1.
getFloatValue() - Method in class edu.sdsc.grid.io.MetaDataCondition
These methods are the same as calling the above list methods, but with an index of 0.
getFloatValue(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the value for the field.
getFloatValue(int, int) - Method in class edu.sdsc.grid.io.MetaDataTable
 
getGSSCredential() - Method in class edu.sdsc.grid.io.srb.SRBAccount
If one exists, gets the GSSCredential used to make a GSI authentication.
getHelp() - Method in class edu.sdsc.grid.io.Protocol
 
getHomeDirectory() - Method in class edu.sdsc.grid.io.GeneralAccount
Returns the homeDirectory used by this GeneralAccount.
getHomeDirectory() - Method in class edu.sdsc.grid.io.GeneralFileSystem
Returns the homeDirectory used by this account on GeneralFileSystem.
getHomeDirectory() - Method in class edu.sdsc.grid.io.local.LocalFile
Gets the home directory to be used with this LocalFile object.
getHost() - Method in class edu.sdsc.grid.io.RemoteAccount
Returns the host used by this RemoteAccount.
getHost() - Method in class edu.sdsc.grid.io.RemoteFileSystem
Returns the host used by the remote account using this RemoteFileSystem.
getIndexOfChild(Object, Object) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Returns the index of child in parent.
getIntSize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Gets the number of bytes occupied by an integer.
getIntValue(int) - Method in class edu.sdsc.grid.io.MetaDataCondition
For a 'rangepair' style conditional, there are two values at indexes 0,0 and 0,1.
getIntValue() - Method in class edu.sdsc.grid.io.MetaDataCondition
These methods are the same as calling the above list methods, but with an index of 0.
getIntValue(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the value for the field.
getIntValue(int, int) - Method in class edu.sdsc.grid.io.MetaDataTable
 
getLongDoubleSize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Gets the number of bytes occupied by a long double-precision float.
getLongLongSize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Gets the number of bytes occupied by a long long integer.
getLongSize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Gets the number of bytes occupied by a long integer.
getMcatZone() - Method in class edu.sdsc.grid.io.srb.SRBAccount
 
getMcatZone() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getMetaData() - Method in class edu.sdsc.grid.io.local.LocalFile
Dummy method for local file metadata.
getMetaDataGroups() - Static method in class edu.sdsc.grid.io.MetaDataSet
Return all the various metadata groups.
getMetaDataGroups(boolean) - Static method in class edu.sdsc.grid.io.MetaDataSet
 
getMetaDataGroups(GeneralFileSystem) - Static method in class edu.sdsc.grid.io.srb.SRBMetaDataSet
Get all the metadata groups, including the SRB extensible metadata for this fileSystem
getMetaDataGroups(GeneralFileSystem, String) - Static method in class edu.sdsc.grid.io.srb.SRBMetaDataSet
Get all the metadata groups, including the SRB extensible metadata for this fileSystem
getMetaDataRecordList(Object) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Returns the metadata query result associated with this node of the tree.
getMetaDataSet() - Method in class edu.sdsc.grid.io.Protocol
 
getMoreResults() - Method in class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Gets further results from the query.
getMoreResults(int) - Method in class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Gets further results from the query.
getMoreResults() - Method in class edu.sdsc.grid.io.local.LocalMetaDataRecordList
 
getMoreResults(int) - Method in class edu.sdsc.grid.io.local.LocalMetaDataRecordList
 
getMoreResults() - Method in class edu.sdsc.grid.io.MetaDataRecordList
By default a query will only return the first so many values which match the query to make querying faster.
getMoreResults(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Same as getMoreResults(), but returns numOfResults instead of the default amount.
getMoreResults() - Method in class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Gets further results from the query.
getMoreResults(int) - Method in class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Gets further results from the query.
getName() - Method in class edu.sdsc.grid.io.GeneralFile
 
getName(int) - Static method in class edu.sdsc.grid.io.Host
Gets the name of the type.
getName() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the name of the file or directory denoted by this abstract pathname.
getName() - Method in class edu.sdsc.grid.io.MetaDataField
Returns the name of the field.
getName() - Method in class edu.sdsc.grid.io.MetaDataGroup
Returns a short name string for this metadata group.
getName() - Method in class edu.sdsc.grid.io.Protocol
 
getName() - Method in class edu.sdsc.grid.io.srb.SRBFile
 
getOperation() - Method in class edu.sdsc.grid.io.MetaDataSelect
Returns the operation code on this selection.
getOperator() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns the operator code for the 'rangepair', 'list' and 'scalar' style conditionals.
getOperator(int) - Method in class edu.sdsc.grid.io.MetaDataTable
 
getOperators() - Method in class edu.sdsc.grid.io.MetaDataTable
 
getOperatorString(int) - Static method in class edu.sdsc.grid.io.MetaDataCondition
 
getOperatorString() - Method in class edu.sdsc.grid.io.MetaDataCondition
 
getOperatorStrings() - Static method in class edu.sdsc.grid.io.MetaDataCondition
 
getOptions() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Gets the SRB options.
getOptions() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getOverwrite() - Method in class edu.sdsc.grid.gui.TransferStatusPanel
If the file exists: If overwrite, force it to be overwritten; if the file cannot be overwritten throw IOException.
If append, the source file will be appended to the destination file.
getParent() - Method in class edu.sdsc.grid.io.GeneralFile
 
getParent() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the pathname string of this abstract pathname's parent, or null if this pathname does not name a parent directory.
getParentFile() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the abstract pathname of this abstract pathname's parent, or null if this pathname does not name a parent directory.
getParentFile() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the abstract pathname of this abstract pathname's parent, or null if this pathname does not name a parent directory.
getParentFile() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Returns the abstract pathname of this abstract pathname's parent, or null if this pathname does not name a parent directory.
getPassword() - Method in class edu.sdsc.grid.io.RemoteAccount
Returns the password used by this RemoteAccount.
getPassword() - Method in class edu.sdsc.grid.io.RemoteFileSystem
Returns the password used by this RemoteAccount.
getPassword() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getPath() - Method in class edu.sdsc.grid.io.GeneralFile
 
getPath() - Method in class edu.sdsc.grid.io.irods.IRODSFile
 
getPath() - Method in class edu.sdsc.grid.io.local.LocalFile
Converts this abstract pathname into a pathname string.
getPath() - Method in class edu.sdsc.grid.io.srb.SRBFile
 
getPathSeparator() - Method in class edu.sdsc.grid.io.GeneralFile
This abstract method gets the path separator as defined by the subclass.
getPathSeparator() - Method in class edu.sdsc.grid.io.irods.IRODSFile
This abstract method gets the path separator as defined by the subclass.
getPathSeparator() - Method in class edu.sdsc.grid.io.local.LocalFile
This method gets the path separator as defined by the local system.
getPathSeparator() - Method in class edu.sdsc.grid.io.srb.SRBFile
Deprecated. Use separator and pathSeparator
getPathSeparatorChar() - Method in class edu.sdsc.grid.io.GeneralFile
This abstract method gets the path separator char as defined by the subclass.
getPathSeparatorChar() - Method in class edu.sdsc.grid.io.irods.IRODSFile
This abstract method gets the path separator char as defined by the subclass.
getPathSeparatorChar() - Method in class edu.sdsc.grid.io.local.LocalFile
This method gets the path separator char as defined by the local system.
getPathSeparatorChar() - Method in class edu.sdsc.grid.io.srb.SRBFile
Deprecated. Use separatorChar and pathSeparatorChar
getPermissions() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Get the permissions of the current user for this SRBContainer: write, read, all, annotate or null.
getPermissions(boolean) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Gets all the non null permissions of all SRB users for this SRBContainer: write, read, all, annotate or null.
getPermissions() - Method in class edu.sdsc.grid.io.srb.SRBFile
Get the permissions of the current user for this SRBFile: write, read, all, annotate or null.
getPermissions(boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Gets all the non-null permissions of all SRB users for this SRBFile: write, read, all, annotate or null.
getPort() - Method in class edu.sdsc.grid.io.RemoteAccount
Returns the port used by this RemoteAccount.
getPort() - Method in class edu.sdsc.grid.io.RemoteFileSystem
Returns the port used by this remote account using this RemoteFileSystem.
getProxyDomainName() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Gets the SRB proxyDomainName.
getProxyDomainName() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getProxyMcatZone() - Method in class edu.sdsc.grid.io.srb.SRBAccount
 
getProxyMcatZone() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getProxyUserName() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Gets the SRB proxyUserName.
getProxyUserName() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getQueryRecordsWanted() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getRandomAccessFile() - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
Returns this object as a standard java.io.RandomAccessFile.
getRecordCount() - Method in class edu.sdsc.grid.io.MetaDataRecordList
Returns the number of records in the list.
getRecordLists() - Method in class edu.sdsc.grid.gui.MetaDataDisplay
Returns the recordList array displayed by this object.
getReplicaNumber() - Method in class edu.sdsc.grid.io.srb.SRBFile
Gets the specific physical data replication refered to by this object.
getResource() - Method in class edu.sdsc.grid.io.irods.IRODSFile
 
getResource() - Method in class edu.sdsc.grid.io.RemoteFile
 
getResource() - Method in class edu.sdsc.grid.io.srb.SRBContainer
 
getResource() - Method in class edu.sdsc.grid.io.srb.SRBFile
 
getRoot(int) - Method in class edu.sdsc.grid.gui.JargonTree
The (sub-)roots of this JTree.
getRoot() - Method in class edu.sdsc.grid.gui.JargonTreeModel
Returns the root of the tree.
getRootDirectories() - Method in class edu.sdsc.grid.io.GeneralFileSystem
Returns the rootDirectory used by this file system.
getRootDirectories() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Returns the root directories of the iRODS file system.
getRootDirectories() - Method in class edu.sdsc.grid.io.local.LocalFileSystem
Returns the root directories of the local file system.
getRootDirectories() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Returns the root directories of the SRB file system.
getRoots() - Method in class edu.sdsc.grid.gui.JargonTree
The (sub-)roots of this JTree.
getRowCount() - Method in class edu.sdsc.grid.io.MetaDataTable
 
getSelects() - Method in class edu.sdsc.grid.gui.JargonTree
Returns the MetaDataSelects.
getServerDN() - Method in class edu.sdsc.grid.io.irods.IRODSAccount
 
getServerDN() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
 
getServerLocalPath() - Method in class edu.sdsc.grid.io.srb.SRBFile
The local filepath of the data when logged on the SRB server.
getShadowPath() - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
 
getShortSize() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Gets the number of bytes occupied by a short integer.
getSignificantBits(int) - Static method in class edu.sdsc.grid.io.Host
Gets the number of significant bits of the type.
getSleepLength() - Method in class edu.sdsc.grid.gui.TransferStatusPanel
Time that threads will sleep.
getSources() - Method in class edu.sdsc.grid.gui.TransferStatusPanel
 
getSRBFile() - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
 
getStandardMessage() - Method in exception edu.sdsc.grid.io.srb.SRBException
 
getStandardMessage(int) - Static method in exception edu.sdsc.grid.io.srb.SRBException
Get the standard SRB error message for any error type.
getStat() - Method in class edu.sdsc.grid.io.srb.SRBFile
Retrieves the platform independent stat structure.
getStorageSize(int) - Static method in class edu.sdsc.grid.io.Host
Gets the number of bytes occupied by the type.
getStringValue(int) - Method in class edu.sdsc.grid.io.MetaDataCondition
For a 'rangepair' style conditional, there are two values at indexes 0 and 1.
getStringValue() - Method in class edu.sdsc.grid.io.MetaDataCondition
These methods are the same as calling the above list methods, but with an index of 0.
getStringValue(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the value for the field.
getStringValue(int, int) - Method in class edu.sdsc.grid.io.MetaDataTable
 
getStringValue(String) - Method in class edu.sdsc.grid.io.MetaDataTable
 
getStringValue(String, int) - Method in class edu.sdsc.grid.io.MetaDataTable
 
getStyle() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns the value style for the conditional.
getTableValue() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns the table stored in this conditional.
getTableValue(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Get the value for the field.
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Configures the editor.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class edu.sdsc.grid.gui.JargonTreeCellRenderer
Sets the value of the current tree cell to value.
getType() - Method in class edu.sdsc.grid.io.MetaDataField
Returns the data type code for the field.
getType() - Method in exception edu.sdsc.grid.io.srb.SRBException
 
getUserName() - Method in class edu.sdsc.grid.io.RemoteAccount
Returns the userName used by this RemoteAccount.
getUserName() - Method in class edu.sdsc.grid.io.RemoteFileSystem
Returns the user name used by this remote account using this RemoteFileSystem.
getValue(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Returns the values in the list.
getValue(MetaDataField) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Returns the value matching this field.
getValue(String) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Returns the value matching this field.
getValue() - Method in class edu.sdsc.grid.io.MetaDataValueEnum
This is the string that is usable, verbatum, as a value for the field when building conditionals.
getVersion() - Static method in class edu.sdsc.grid.io.irods.IRODSAccount
Gets the iRODS version.
getVersion() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
 
getVersion() - Static method in class edu.sdsc.grid.io.srb.SRBAccount
Gets the SRB version.
getVersion() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getVersionNumber() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
 
getVersionNumber() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
 
getWriteBufferSize() - Static method in class edu.sdsc.grid.io.srb.SRBFileSystem
Get the buffer size used by the SRB socket write.
getZone() - Method in class edu.sdsc.grid.io.irods.IRODSAccount
 
GREATER_OR_EQUAL - Static variable in class edu.sdsc.grid.io.MetaDataCondition
">=" where the metadata value is greater than or equal to the conditional value, lexicographical compare for strings.
GREATER_THAN - Static variable in class edu.sdsc.grid.io.MetaDataCondition
">" where the metadata value is greater than the conditional value, lexicographical compare for strings.
GROUP_ANNOTATIONS - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Annotations attributes.
GROUP_AUDIT - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Audit attributes.
GROUP_AUTHENTICATION - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Authentication attributes.
GROUP_AUTHORIZATION - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Authorization attributes.
GROUP_COMPOUND_RESOURCE - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Compound resource attributes.
GROUP_CONTAINER - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Container attributes.
GROUP_DATA - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to File/Dataset attributes.
GROUP_DEFINABLE_METADATA - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Definable metadata attributes.
GROUP_DIRECTORY - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Directory/Collection attributes.
GROUP_DUBLIN_CORE - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Dublin Core attributes.
GROUP_EXTENSIBLE - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Extensible metadata attributes.
GROUP_GUID - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to GUID attributes.
GROUP_INDEX - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Index attributes.
GROUP_LOGICAL_RESOURCE - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Logical resource attributes.
GROUP_METHOD - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Method attributes.
GROUP_PHYSICAL_RESOURCE - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Physical resource attributes.
GROUP_RESOURCE - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to resource attributes.
GROUP_SERVER - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Server attributes.
GROUP_STRUCTURED_METADATA - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Structured Metadata attributes.
GROUP_TICKET - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Ticket attributes.
GROUP_UNDEFINED - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Undefined attributes.
GROUP_USER - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to User attributes.
GROUP_USER_GROUP - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to User group attributes.
GROUP_ZONE - Static variable in class edu.sdsc.grid.io.MetaDataSet
Group name for metadata relating to Zone attributes.
groupName - Variable in class edu.sdsc.grid.io.MetaDataGroup
 
groups - Variable in class edu.sdsc.grid.gui.SelectionChooser
The list of MetaDataGroups, for selecting the sublist of MetaDataFields.
GSI_AUTH - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
GSI authentication protocol
GSI_DELEGATE - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
GSI delegated authentication protocol
gssCredential - Variable in class edu.sdsc.grid.io.srb.SRBAccount
Stores the GSSCredential.
GUID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
guid
GUID_FLAG - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
guid flag
GUID_TIME_STAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
guid timestamp

H

hashCode() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Computes a hash code for this abstract pathname.
hashCode() - Method in class edu.sdsc.grid.io.local.LocalFile
Computes a hash code for this abstract pathname.
hashCode() - Method in class edu.sdsc.grid.io.srb.SRBFile
Computes a hash code for this abstract pathname.
help - Variable in class edu.sdsc.grid.io.Protocol
 
homeDirectory - Variable in class edu.sdsc.grid.io.GeneralAccount
The home directory on the server
Host - Class in edu.sdsc.grid.io
The Host class describes important attributes of the current host processor, compiler, and operating system.
Host() - Constructor for class edu.sdsc.grid.io.Host
 
host - Variable in class edu.sdsc.grid.io.RemoteAccount
The host to connect to on the server.

I

IN - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"in" where the metadata value exactly equals one of the conditional values in the value list.
include(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Adds the named file to this container.
INDEX_NAME_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data name of index on data type
INDEX_NAME_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data name of index on collection
INDEX_NAME_FOR_FILE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data name of index on data
INT - Static variable in class edu.sdsc.grid.io.Host
A language primitive signed or unsigned integer.
INT - Static variable in class edu.sdsc.grid.io.MetaDataField
The value type for the field.
INT_IS_DIRTY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int is dirty
INT_OFFSET - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int offset
INT_PATH_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int path name
INT_PATH_NAME_FOR_REPL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int path name for repls
INT_REPLICATION_ENUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int replication enum
INT_RESOURCE_ADDRESS_NETPREFIX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int resource address netprefix
INT_RESOURCE_CLASS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int resource class
INT_RESOURCE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int resource name
INT_RESOURCE_TYPE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int resource type name
INT_SEG_NUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int seg num
INT_SIZE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
int size
INTERNAL_STRUCTURED_METADATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-inserted structured metadata stored as a string inside MCAT
intValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary integer value contained in the byte array, and described by this binary data format, into an integer in the host's native binary data format.
intValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary integer value contained in the byte array, and described by this binary data format, into an integer in the host's native binary data format.
intValues(byte[], int[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary int values contained in the byte array, and described by this binary data format, into an array of ints in the host's native binary data format.
IRODS_API_VERSION - Static variable in class edu.sdsc.grid.io.irods.IRODSAccount
iRODS API version "b"
IRODS_ROOT - Static variable in class edu.sdsc.grid.io.irods.IRODSFileSystem
The iRODS like Unix only has one root, "/".
IRODS_VERSION_0_9 - Static variable in class edu.sdsc.grid.io.irods.IRODSAccount
iRODS version 1.0
IRODS_VERSION_1_0 - Static variable in class edu.sdsc.grid.io.irods.IRODSAccount
iRODS version 1.0
IRODSAccount - Class in edu.sdsc.grid.io.irods
This class extends the RemoteAccount class, adding those values necessary to open a connection to a iRODS server.
IRODSAccount() - Constructor for class edu.sdsc.grid.io.irods.IRODSAccount
This constructor uses the default info found in the iRODS environment files in the user's local home directory.
IRODSAccount(GeneralFile) - Constructor for class edu.sdsc.grid.io.irods.IRODSAccount
Creates an object to hold iRODS account information.
IRODSAccount(GeneralFile, GeneralFile) - Constructor for class edu.sdsc.grid.io.irods.IRODSAccount
Creates an object to hold iRODS account information.
IRODSAccount(String, int, String, String, String, String, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSAccount
Creates an object to hold iRODS account information.
IRODSException - Exception in edu.sdsc.grid.io.irods
 
IRODSFile - Class in edu.sdsc.grid.io.irods
An abstract representation of file and directory pathnames on a iRODS server.
IRODSFile(IRODSFileSystem, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSFile
Creates a new IRODSFile instance by converting the given pathname string into an abstract pathname.
IRODSFile(IRODSFileSystem, String, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSFile
Creates a new iRODSFile instance from a parent pathname string and a child pathname string.
IRODSFile(IRODSFile, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSFile
Creates a new IRODSFile instance from a parent abstract pathname and a child pathname string.
IRODSFile(URI) - Constructor for class edu.sdsc.grid.io.irods.IRODSFile
Creates a new IRODSFile instance by converting the given file: URI into an abstract pathname.
IRODSFileInputStream - Class in edu.sdsc.grid.io.irods
A IRODSFileInputStream obtains input bytes from a file in a IRODS file system.
IRODSFileInputStream(IRODSFileSystem, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSFileInputStream
Creates a IRODSFileInputStream by opening a connection to an actual file, the file named by the path name name in the file system.
IRODSFileInputStream(IRODSFile) - Constructor for class edu.sdsc.grid.io.irods.IRODSFileInputStream
Creates a IRODSFileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
IRODSFileOutputStream - Class in edu.sdsc.grid.io.irods
A IRODSFileOutputStream writes bytes to a file in a file system.
IRODSFileOutputStream(IRODSFileSystem, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSFileOutputStream
Creates a FileOuputStream by opening a connection to an actual file, the file named by the path name name in the file system.
IRODSFileOutputStream(IRODSFile) - Constructor for class edu.sdsc.grid.io.irods.IRODSFileOutputStream
Creates a FileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
IRODSFileSystem - Class in edu.sdsc.grid.io.irods
The IRODSFileSystem class is the class for connection implementations to iRods servers.
IRODSFileSystem() - Constructor for class edu.sdsc.grid.io.irods.IRODSFileSystem
Opens a socket connection to read from and write to.
IRODSFileSystem(IRODSAccount) - Constructor for class edu.sdsc.grid.io.irods.IRODSFileSystem
Opens a socket connection to read from and write to.
IRODSMetaDataRecordList - Class in edu.sdsc.grid.io.irods
Results of long queries will only return a partial list to save on bandwidth which can be iterated through by further calls to the server.
IRODSMetaDataRecordList(MetaDataField, int) - Constructor for class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
IRODSMetaDataRecordList(MetaDataField, float) - Constructor for class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
IRODSMetaDataRecordList(MetaDataField, Integer) - Constructor for class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
IRODSMetaDataRecordList(MetaDataField, Float) - Constructor for class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
IRODSMetaDataRecordList(MetaDataField, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
IRODSMetaDataSet - Class in edu.sdsc.grid.io.irods
 
IRODSProtocol - Class in edu.sdsc.grid.io.irods
 
IRODSProtocol() - Constructor for class edu.sdsc.grid.io.irods.IRODSProtocol
 
IRODSRandomAccessFile - Class in edu.sdsc.grid.io.irods
Instances of this class support both reading and writing to a IRODS random access file.
IRODSRandomAccessFile(IRODSFileSystem, String, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, a file with the specified name.
IRODSRandomAccessFile(IRODSFile, String) - Constructor for class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, a file with the specified name.
IS_DIRTY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data has been changed compared to other copies currently used only for containered data
isAbsolute() - Method in class edu.sdsc.grid.io.GeneralFile
Tests whether this abstract pathname is absolute in a system-dependant way.
isAbsolute() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether this abstract pathname is absolute.
isAbsolute() - Method in class edu.sdsc.grid.io.local.LocalFile
Tests whether this abstract pathname is absolute.
isAbsolute() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether this abstract pathname is absolute.
isCellEditable(EventObject) - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Returns true.
isClosed - Variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Has this random access file been closed.
isClosed() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Returns true if this random access file is closed.
isClosed() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Returns if the connection to the SRB has been closed or not.
isClosed() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Returns if the connection to the SRB has been closed or not.
isConnected() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Checks if the socket is connected.
isConnected() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Checks if the socket is connected.
isContainer() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests whether the object denoted by this abstract pathname is a container.
isContainer() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the file denoted by this abstract pathname is a SRB container.
isDirectory() - Method in class edu.sdsc.grid.io.GeneralFile
Tests whether the file denoted by this abstract pathname is a directory.
isDirectory() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether the file denoted by this abstract pathname is a directory.
isDirectory() - Method in class edu.sdsc.grid.io.local.LocalFile
Tests whether the file denoted by this abstract pathname is a directory.
isDirectory() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests whether the file denoted by this abstract pathname is a directory.
isDirectory() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the file denoted by this abstract pathname is a directory.
isDirectory(boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the file denoted by this abstract pathname is a directory.
isExtensible(Protocol) - Method in class edu.sdsc.grid.io.MetaDataField
Returns true if and only if this field is an extensible field under the given protocol.
isFile() - Method in class edu.sdsc.grid.io.GeneralFile
Tests whether the file denoted by this abstract pathname is a normal file.
isFile() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether the file denoted by this abstract pathname is a normal file.
isFile(boolean) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether the file denoted by this abstract pathname is a file.
isFile() - Method in class edu.sdsc.grid.io.local.LocalFile
Tests whether the file denoted by this abstract pathname is a normal file.
isFile() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests whether the file denoted by this abstract pathname is a normal file.
isFile() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the file denoted by this abstract pathname is a normal file.
isFile(boolean) - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the file denoted by this abstract pathname is a file.
isHidden() - Method in class edu.sdsc.grid.io.GeneralFile
Tests whether the file named by this abstract pathname is a hidden file.
isHidden() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Tests whether the file named by this abstract pathname is a hidden file.
isHidden() - Method in class edu.sdsc.grid.io.local.LocalFile
Tests whether the file named by this abstract pathname is a hidden file.
isHidden() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Tests whether the file named by this abstract pathname is a hidden file.
isHidden() - Method in class edu.sdsc.grid.io.srb.SRBFile
Tests whether the file named by this abstract pathname is a hidden file.
isLBFByteOrder() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Returns true if the binary data byte order is Least-significant-Byte-First (LBF); otherwise false when the byte order is instead Most-significant-Byte-First (MBF).
isLBFByteOrder() - Static method in class edu.sdsc.grid.io.Host
Returns true if the host's byte order is "little endian" or Least-significant-Byte-First (LBF); otherwise false.
isLeaf(Object) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Returns true if node is a leaf.
isMBFByteOrder() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Returns true if the binary data byte order is Most-significant-Byte-First (MBF); otherwise false when the byte order is instead Least-significant-Byte-First (LBF).
isMBFByteOrder() - Static method in class edu.sdsc.grid.io.Host
Returns true if the host's byte order is "big endian" or Most-significant-Byte-First (MBF); otherwise false.
isQueryComplete() - Method in class edu.sdsc.grid.io.irods.IRODSMetaDataRecordList
Tests if this IRODSMetaDataRecordList can return more values from the query.
isQueryComplete() - Method in class edu.sdsc.grid.io.local.LocalMetaDataRecordList
 
isQueryComplete() - Method in class edu.sdsc.grid.io.MetaDataRecordList
Tests if the query has more values to be retrieved.
isQueryComplete() - Method in class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Tests if this SRBMetaDataRecordList can return more values from the query.
IX_DATATYPE_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
index type for INDEX_NAME_FOR_DATATYPE
IX_DATATYPE_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
index type for INDEX_NAME_FOR_DIRECTORY
IX_DATATYPE_FOR_FILE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
index type for INDEX_NAME_FOR_FILE
IX_DIRECTORY_NAME_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name of index on data type in INDEX_NAME_FOR_DATATYPE
IX_DIRECTORY_NAME_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name of index on collection in INDEX_NAME_FOR_DIRECTORY
IX_DIRECTORY_NAME_FOR_FILE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name of index on data in FILE_TYPE_NAME
IX_LOCATION_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
path name of index in INDEX_NAME_FOR_DATATYPE
IX_LOCATION_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
path name of index in INDEX_NAME_FOR_DIRECTORY
IX_LOCATION_FOR_FILE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
path name of index in INDEX_NAME_FOR_FILE

J

JargonTree - Class in edu.sdsc.grid.gui
A utility class which creates a JTree using the Jargon GUI package.
JargonTree(GeneralFile) - Constructor for class edu.sdsc.grid.gui.JargonTree
Creates a new JTree using the JargonTreeModel, JargonTreeCellRenderer and JargonTreeCellEditor.
JargonTree(GeneralFile[]) - Constructor for class edu.sdsc.grid.gui.JargonTree
Creates a new JTree using the JargonTreeModel, JargonTreeCellRenderer and JargonTreeCellEditor.
JargonTree(GeneralFile, MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTree
Creates a new JTree using the JargonTreeModel, JargonTreeCellRenderer and JargonTreeCellEditor.
JargonTree(GeneralFile[], MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTree
Creates a new JTree using the JargonTreeModel, JargonTreeCellRenderer and JargonTreeCellEditor.
JargonTree(GeneralFile, MetaDataCondition[], MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTree
Creates a new JTree using the JargonTreeModel, JargonTreeCellRenderer and JargonTreeCellEditor.
JargonTree(GeneralFile[], MetaDataCondition[], MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTree
Creates a new JTree using the JargonTreeModel, JargonTreeCellRenderer and JargonTreeCellEditor.
JargonTreeCellEditor - Class in edu.sdsc.grid.gui
Creates an editor for a tree node.
JargonTreeCellEditor() - Constructor for class edu.sdsc.grid.gui.JargonTreeCellEditor
Default constructor, does nothing.
JargonTreeCellRenderer - Class in edu.sdsc.grid.gui
Displays an entry in a tree.
JargonTreeCellRenderer() - Constructor for class edu.sdsc.grid.gui.JargonTreeCellRenderer
Default empty constructor.
JargonTreeModel - Class in edu.sdsc.grid.gui
The class extends the default tree model to use GeneralFiles as the nodes of the tree.
JargonTreeModel(GeneralFile) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with this GeneralFile as the root node.
JargonTreeModel(GeneralFile[]) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with a fake root node, TOP_LEVEL, with the roots as children to that root.
JargonTreeModel(GeneralFile, MetaDataCondition[]) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with this GeneralFile as the root node.
JargonTreeModel(GeneralFile[], MetaDataCondition[]) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with a fake root node, TOP_LEVEL, with the roots as children to that root.
JargonTreeModel(GeneralFile, MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with this GeneralFile as the root node.
JargonTreeModel(GeneralFile[], MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with a fake root node, TOP_LEVEL, with the roots as children to that root.
JargonTreeModel(GeneralFile, MetaDataCondition[], MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with this GeneralFile as the root node.
JargonTreeModel(GeneralFile[], MetaDataCondition[], MetaDataSelect[]) - Constructor for class edu.sdsc.grid.gui.JargonTreeModel
Starts the tree with a fake root node, TOP_LEVEL, with the roots as children to that root.

L

lastModified() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the time that the file denoted by this abstract pathname was last modified.
lastModified() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Returns the time that the file denoted by this abstract pathname was last modified.
lastModified() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the time that the file denoted by this abstract pathname was last modified.
lastModified() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Returns the time that the file denoted by this abstract pathname was last modified.
lastModified() - Method in class edu.sdsc.grid.io.srb.SRBFile
Returns the time that the file denoted by this abstract pathname was last modified.
LDAP_CATALOG - Static variable in class edu.sdsc.grid.io.srb.SRBFile
A SRB catalog type.
length() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the length of the file denoted by this abstract pathname.
length() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Returns the length of this file.
length() - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Returns the length of this file.
length() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the length of the file denoted by this abstract pathname.
length() - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
Returns the length of this file.
length() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Returns the length of the container denoted by this abstract pathname.
length() - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Returns the length of this file.
length() - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
Returns the length of this file.
LESS_OR_EQUAL - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"<=" where the metadata value is less than or equal to the conditional value, lexicographical compare for strings.
LESS_THAN - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"<" where the metadata value is less than the conditional value, lexicographical compare for strings.
LIKE - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"like" where the metadata value contains the conditional value.
link(SRBFile) - Method in class edu.sdsc.grid.io.srb.SRBFile
Links newLink with this object as the source.
list() - Method in class edu.sdsc.grid.io.GeneralFile
Returns an array of strings naming the files and directories in the directory denoted by this abstract pathname.
list(MetaDataCondition[]) - Method in class edu.sdsc.grid.io.GeneralFile
 
list() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Returns an array of strings naming the files and directories in the directory denoted by this abstract pathname.
list(MetaDataCondition[]) - Method in class edu.sdsc.grid.io.irods.IRODSFile
 
list() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns an array of strings naming the files and directories in the directory denoted by this abstract pathname.
list(FilenameFilter) - Method in class edu.sdsc.grid.io.local.LocalFile
Returns an array of strings naming the files and directories in the directory denoted by this abstract pathname that satisfy the specified filter.
list() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Returns an array of strings naming the files and directories in the container denoted by this abstract pathname.
list() - Method in class edu.sdsc.grid.io.srb.SRBFile
Returns an array of strings naming the files and directories in the directory denoted by this abstract pathname.
list(MetaDataCondition[]) - Method in class edu.sdsc.grid.io.srb.SRBFile
Returns the array of strings naming the files and directories in the directory denoted by this abstract pathname and which match a query formed using these conditions.
list() - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
Returns an array of strings naming the files and directories in the directory denoted by this abstract pathname.
listenerList - Variable in class edu.sdsc.grid.gui.JargonTreeModel
The listeners
listFiles() - Method in class edu.sdsc.grid.io.GeneralFile
Returns an array of abstract pathnames denoting the files in the directory denoted by this abstract pathname.
listFiles() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns an array of abstract pathnames denoting the files in the directory denoted by this abstract pathname.
listFiles(FileFilter) - Method in class edu.sdsc.grid.io.local.LocalFile
Returns an array of abstract pathnames denoting the files and directories in the directory denoted by this abstract pathname that satisfy the specified filter.
listFiles(FilenameFilter) - Method in class edu.sdsc.grid.io.local.LocalFile
Returns an array of abstract pathnames denoting the files and directories in the directory denoted by this abstract pathname that satisfy the specified filter.
listFiles() - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
Returns an array of strings naming the files and directories in the directory denoted by this abstract pathname.
listIterator() - Method in class edu.sdsc.grid.io.local.LocalFile
Iterates through the directory/collection/container list.
listRoots() - Static method in class edu.sdsc.grid.io.GeneralFile
Deprecated. Doesn't work reliably without pre-existing fileSystem. use listRoots( GeneralFileSystem )
listRoots(GeneralFileSystem) - Static method in class edu.sdsc.grid.io.GeneralFile
List the available filesystem roots.
listRoots() - Static method in class edu.sdsc.grid.io.local.LocalFile
List the available filesystem roots.
LocalAccount - Class in edu.sdsc.grid.io.local
An object to hold the user information used when connecting to a remote server.
LocalAccount() - Constructor for class edu.sdsc.grid.io.local.LocalAccount
Constructs an object to hold the user information used when connecting to a remote server.
LocalAccount(String) - Constructor for class edu.sdsc.grid.io.local.LocalAccount
Constructs an object to hold the user information used when connecting to a remote server.
LocalFile - Class in edu.sdsc.grid.io.local
The LocalFile class is a wrapper class for the java.io.File class.
LocalFile(String) - Constructor for class edu.sdsc.grid.io.local.LocalFile
Creates a new LocalFile instance by converting the given pathname string into an abstract pathname.
LocalFile(String, String) - Constructor for class edu.sdsc.grid.io.local.LocalFile
Creates a new LocalFile instance from a parent pathname string and a child pathname string.
LocalFile(LocalFile, String) - Constructor for class edu.sdsc.grid.io.local.LocalFile
Creates a new LocalFile instance from a parent abstract pathname and a child pathname string.
LocalFile(File) - Constructor for class edu.sdsc.grid.io.local.LocalFile
Creates a new File instance from a file object.
LocalFile(File, String) - Constructor for class edu.sdsc.grid.io.local.LocalFile
Creates a new File instance from a file object.
LocalFile(URI) - Constructor for class edu.sdsc.grid.io.local.LocalFile
Creates a new LocalFile instance by converting the given file: URI into an abstract pathname.
LocalFileInputStream - Class in edu.sdsc.grid.io.local
A LocalFileInputStream obtains input bytes from a file in a file system.
LocalFileInputStream(String) - Constructor for class edu.sdsc.grid.io.local.LocalFileInputStream
Creates a LocalFileInputStream by opening a connection to an actual file, the file named by the path name name in the file system.
LocalFileInputStream(LocalFile) - Constructor for class edu.sdsc.grid.io.local.LocalFileInputStream
Creates a LocalFileInputStream by opening a connection to an actual file, the file named by the LocalFile object file in the file system.
LocalFileOutputStream - Class in edu.sdsc.grid.io.local
A LocalFileOutputStream writes bytes to a file in a file system.
LocalFileOutputStream(String) - Constructor for class edu.sdsc.grid.io.local.LocalFileOutputStream
Creates a LocalFileOutputStream by opening a connection to an actual file, the file named by the path name name in the file system.
LocalFileOutputStream(LocalFile) - Constructor for class edu.sdsc.grid.io.local.LocalFileOutputStream
Creates a LocalFileOutputStream by opening a connection to an actual file, the file named by the LocalFile object file in the file system.
LocalFileSystem - Class in edu.sdsc.grid.io.local
The LocalFileSystem class is the class for connection implementations to the local file systems.
LocalFileSystem() - Constructor for class edu.sdsc.grid.io.local.LocalFileSystem
Opens a socket connection to read from and write to.
LocalFileSystem(LocalAccount) - Constructor for class edu.sdsc.grid.io.local.LocalFileSystem
Opens a socket connection to read from and write to.
LocalMetaDataRecordList - Class in edu.sdsc.grid.io.local
LocalMetaDataRecordList does nothing.
LocalMetaDataRecordList() - Constructor for class edu.sdsc.grid.io.local.LocalMetaDataRecordList
Does nothing
LocalRandomAccessFile - Class in edu.sdsc.grid.io.local
A wrapper class for java.io.RandomAccessFile.
LocalRandomAccessFile(String, String) - Constructor for class edu.sdsc.grid.io.local.LocalRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, the file specified by the String argument.
LocalRandomAccessFile(File, String) - Constructor for class edu.sdsc.grid.io.local.LocalRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, the file specified by the File argument.
LocalRandomAccessFile(LocalFile, String) - Constructor for class edu.sdsc.grid.io.local.LocalRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, the file specified by the LocalFile argument.
LOCATION_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
location of resource name
LONG - Static variable in class edu.sdsc.grid.io.Host
A language primitive signed or unsigned long integer.
LONG - Static variable in class edu.sdsc.grid.io.MetaDataField
The value type for the field.
LONGDOUBLE - Static variable in class edu.sdsc.grid.io.Host
A language primitive long double.
longDoubleValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary long double value contained in the byte array, and described by this binary data format, into a long double in the host's native binary data format.
longDoubleValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary long double value contained in the byte array, and described by this binary data format, into a long double in the host's native binary data format.
longDoubleValues(byte[], double[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary long double values contained in the byte array, and described by this binary data format, into an array of long double in the host's native binary data format.
LONGLONG - Static variable in class edu.sdsc.grid.io.Host
A language primitive signed or unsigned long long integer.
longLongValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary long long value contained in the byte array, and described by this binary data format, into a long long in the host's native binary data format.
longLongValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary long long value contained in the byte array, and described by this binary data format, into a long long in the host's native binary data format.
longLongValues(byte[], long[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary long long values contained in the byte array, and described by this binary data format, into an array of long longs in the host's native binary data format.
longValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary long value contained in the byte array, and described by this binary data format, into a long in the host's native binary data format.
longValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary long value contained in the byte array, and described by this binary data format, into a long in the host's native binary data format.
longValues(byte[], long[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary long values contained in the byte array, and described by this binary data format, into an array of longs in the host's native binary data format.

M

main(String[]) - Static method in class edu.sdsc.grid.gui.JargonTree
Stand alone testing.
main(String[]) - Static method in class edu.sdsc.grid.gui.TransferStatusPanel
Test method
mainList - Variable in class edu.sdsc.grid.gui.SelectionChooser
Holds the groups, or if groups is null, then holds the fields.
MAX_OBJ_SIZE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
maximum size of data object allowed in resource not enforced by MCAT
MAX_TYPE_SIZE - Static variable in class edu.sdsc.grid.io.Host
The guaranteed maximum number of bytes ever needed to hold the largest data type.
MDAS_CATALOG - Static variable in class edu.sdsc.grid.io.srb.SRBFile
Default SRB catalog type.
mergeConditions(MetaDataCondition, MetaDataCondition) - Static method in class edu.sdsc.grid.io.MetaDataSet
The mergeConditons( ...
mergeConditions(MetaDataCondition, MetaDataCondition[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
The mergeConditons( ...
mergeConditions(MetaDataCondition[], MetaDataCondition[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
The mergeConditons( ...
mergeSelects(MetaDataSelect, MetaDataSelect) - Static method in class edu.sdsc.grid.io.MetaDataSet
The mergeSelects( ...
mergeSelects(MetaDataSelect, MetaDataSelect[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
The mergeSelects( ...
mergeSelects(MetaDataSelect[], MetaDataSelect[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
The mergeSelects( ...
METADATA_NUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
metadata num
METADATA_NUM_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-defined string metadata for collection
METADATA_NUM_RESOURCE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
METADATA_NUM_USER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
MetaDataCondition - Class in edu.sdsc.grid.io
A "meta data condition" describes a conditional expression to be used to guide a metadata query.
MetaDataDisplay - Class in edu.sdsc.grid.gui
A gui for the MetaDataRecordList class.
MetaDataDisplay(MetaDataRecordList) - Constructor for class edu.sdsc.grid.gui.MetaDataDisplay
Displays the recordList as the row data for JTable.
MetaDataDisplay(MetaDataRecordList[]) - Constructor for class edu.sdsc.grid.gui.MetaDataDisplay
Displays these recordLists as the row data for JTable.
MetaDataDisplay(GeneralFile, MetaDataRecordList) - Constructor for class edu.sdsc.grid.gui.MetaDataDisplay
Displays the recordList as the row data for JTable.
MetaDataDisplay(GeneralFileSystem, MetaDataRecordList[]) - Constructor for class edu.sdsc.grid.gui.MetaDataDisplay
Displays these recordLists as the row data for JTable.
MetaDataField - Class in edu.sdsc.grid.io
A "meta data field" is an attribute of a file.
MetaDataField(String, String, int, Protocol) - Constructor for class edu.sdsc.grid.io.MetaDataField
Constructs a field description.
MetaDataField(String, String, int, Protocol, String) - Constructor for class edu.sdsc.grid.io.MetaDataField
Constructs a field description.
metaDataFields - Static variable in class edu.sdsc.grid.io.MetaDataSet
 
MetaDataGroup - Class in edu.sdsc.grid.io
A "Meta data group" is a group of meta data fields.
MetaDataGroup(String, String) - Constructor for class edu.sdsc.grid.io.MetaDataGroup
Construct a metadata group and register the group in a master list of groups maintained by the MetaDataSet class.
metaDataGroups - Static variable in class edu.sdsc.grid.io.MetaDataSet
 
MetaDataRecordList - Class in edu.sdsc.grid.io
The results of a query.
MetaDataRecordList(MetaDataField[], Object[]) - Constructor for class edu.sdsc.grid.io.MetaDataRecordList
 
MetaDataRecordList(MetaDataField, int) - Constructor for class edu.sdsc.grid.io.MetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
MetaDataRecordList(MetaDataField, float) - Constructor for class edu.sdsc.grid.io.MetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
MetaDataRecordList(MetaDataField, Integer) - Constructor for class edu.sdsc.grid.io.MetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
MetaDataRecordList(MetaDataField, Float) - Constructor for class edu.sdsc.grid.io.MetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
MetaDataRecordList(MetaDataField, String) - Constructor for class edu.sdsc.grid.io.MetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
MetaDataRecordList(MetaDataField, MetaDataTable) - Constructor for class edu.sdsc.grid.io.MetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
MetaDataSelect - Class in edu.sdsc.grid.io
A "meta data select" indicates a single field that should be returned on a query.
MetaDataSet - Class in edu.sdsc.grid.io
A "Meta data group" is a group of meta data fields.
MetaDataSet() - Constructor for class edu.sdsc.grid.io.MetaDataSet
 
metaDataSet - Variable in class edu.sdsc.grid.io.Protocol
 
MetaDataTable - Class in edu.sdsc.grid.io
 
MetaDataTable(int[], String[][]) - Constructor for class edu.sdsc.grid.io.MetaDataTable
 
MetaDataValueEnum - Class in edu.sdsc.grid.io
Some meta data fields have a specific list of values that they allow.
METHOD_DATATYPE_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
method type for METHOD_NAME_FOR_DATATYPE
METHOD_DATATYPE_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
method type for METHOD_NAME_FOR_DIRECTORY
METHOD_DATATYPE_FOR_FILE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
method type for METHOD_NAME_FOR_FILE
METHOD_DIRECTORY_NAME_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name of method on data type in METHOD_NAME_FOR_DATATYPE
METHOD_DIRECTORY_NAME_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name of method on collection in METHOD_NAME_FOR_DIRECTORY
METHOD_DIRECTORY_NAME_FOR_FILE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name of method on data in METHOD_NAME_FOR_FILE
METHOD_NAME_FOR_DATATYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data name of method on data type
METHOD_NAME_FOR_DIRECTORY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data name of method on collection
METHOD_NAME_FOR_FILE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data name of method on data
mkdir() - Method in class edu.sdsc.grid.io.GeneralFile
Creates the directory named by this abstract pathname.
mkdir() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Creates the directory named by this abstract pathname.
mkdir() - Method in class edu.sdsc.grid.io.local.LocalFile
Creates the directory named by this abstract pathname.
mkdir() - Method in class edu.sdsc.grid.io.srb.SRBContainer
Creates the container named by this abstract pathname.
mkdir() - Method in class edu.sdsc.grid.io.srb.SRBFile
Creates the directory named by this abstract pathname.
mkdirs() - Method in class edu.sdsc.grid.io.GeneralFile
Creates the directory named by this abstract pathname, including any necessary but nonexistent parent directories.
mkdirs() - Method in class edu.sdsc.grid.io.local.LocalFile
Creates the directory named by this abstract pathname, including any necessary but nonexistent parent directories.
mode - Variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
 
MODIFICATION_DATE - Static variable in interface edu.sdsc.grid.io.GeneralMetaData
 
modifyMetaData(MetaDataRecordList) - Method in class edu.sdsc.grid.io.GeneralFile
Used to modify the metadata associated with this file object.
modifyMetaData(MetaDataRecordList) - Method in class edu.sdsc.grid.io.srb.SRBFile
Change the values of the metadata associated with this file object.

N

name - Variable in class edu.sdsc.grid.io.Protocol
 
NEW_AUDIT_ACTION_DESCRIPTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
new audit action description
NEW_AUDIT_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
new audit comments
NEW_AUDIT_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
new audit timestamp
newCondition(String, int, String) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match a given value.
newCondition(String, int, float) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match a given value.
newCondition(String, int, int) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match a given value.
newCondition(String, int, int, int) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match a given value range.
newCondition(String, int, float, float) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match a given value range.
newCondition(String, int, String, String) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match a given value range.
newCondition(String, int, int[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match the given values.
newCondition(String, int, float[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match the given values.
newCondition(String, int, String[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match/not match the given values.
newCondition(String, MetaDataTable) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match the given values as described by the MetaDataTable.
newCondition(String, int, MetaDataTable) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new condition object that requests that a given field match the given values as described by the MetaDataTable.
newFile(URI) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using this uri.
newFile(URI, String) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using this uri.
newFile(URI, Object) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using this uri.
newFile(GeneralAccount, String) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using a GeneralAccount object to first create a GeneralFileSystem connection.
newFile(GeneralAccount, String, String) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using a GeneralAccount object to first create a GeneralFileSystem connection.
newFile(GeneralFileSystem, String) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using a GeneralFileSystem object.
newFile(GeneralFileSystem, String, String) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using a GeneralFileSystem object.
newFile(GeneralFile, String) - Static method in class edu.sdsc.grid.io.FileFactory
Creates an abstract pathname using a GeneralFileSystem object.
newFileInputStream(GeneralFile) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an input stream for the file on an arbitrary file system.
newFileInputStream(URI) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an input stream for the file on an arbitrary file system.
newFileOutputStream(GeneralFile) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an output stream for the file on an arbitrary file system.
newFileOutputStream(URI) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an output stream for the file on an arbitrary file system.
newFileSystem(GeneralAccount) - Static method in class edu.sdsc.grid.io.FileFactory
Creates a filesystem appropriate to the account object.
newFileSystem(URI) - Static method in class edu.sdsc.grid.io.FileFactory
Creates a filesystem based on the URI.
newFileSystem(URI, Object) - Static method in class edu.sdsc.grid.io.FileFactory
Creates a filesystem based on the URI.
newMetaDataRecordList(GeneralFileSystem, MetaDataField, int) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an output stream for the file on an arbitrary file system.
newMetaDataRecordList(GeneralFileSystem, MetaDataField, float) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an output stream for the file on an arbitrary file system.
newMetaDataRecordList(GeneralFileSystem, MetaDataField, String) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an output stream for the file on an arbitrary file system.
newMetaDataRecordList(GeneralFileSystem, MetaDataField, MetaDataTable) - Static method in class edu.sdsc.grid.io.FileFactory
Opens an output stream for the file on an arbitrary file system.
newRandomAccessFile(GeneralFileSystem, String, String) - Static method in class edu.sdsc.grid.io.FileFactory
Opens a random accecss connection to the file on an arbitrary file system.
newRandomAccessFile(GeneralFile, String) - Static method in class edu.sdsc.grid.io.FileFactory
Opens a random accecss connection to the file on an arbitrary file system.
newRandomAccessFile(URI, String) - Static method in class edu.sdsc.grid.io.FileFactory
Opens a random accecss connection to the file on an arbitrary file system.
newSelection(String) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new selection object that requests that records returned by a query include this field.
newSelection(String[]) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new array of selection objects that request that all fields in this group be included in returned records from a query.
newSelection(String, int) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new selection object that requests a specific operation be performed on query results involving this field.
newSelection(MetaDataGroup) - Static method in class edu.sdsc.grid.io.MetaDataSet
Returns a new array of selection objects that request that all fields in this group be included in returned records from a query.
NOT_BETWEEN - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"not between" where the metadata value is not between the two conditional values, lexicographical compare for strings.
NOT_EQUAL - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"!=" where the metadata value is not exactly equal to the conditional value.
NOT_IN - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"not in" where the metadata value does not exactly equals one of the conditional values in the value list.
NOT_LIKE - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"not like" where the metadata value does not contains the conditional value.
NUMBER_TYPES - Static variable in class edu.sdsc.grid.io.Host
The number of language primitive types.

O

OFFSET - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
position of data in container
open(GeneralFile) - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.GeneralFileOutputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Opens a file and returns the file descriptor.
open(GeneralFile) - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.irods.IRODSFileOutputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Opens this file.
open(GeneralFile) - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.local.LocalFileOutputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
 
open(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBFileOutputStream
Opens the given file for use by this stream.
open(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Opens this file.
open(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
Opens the given file for use by this stream.
options - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The srb options.
OVERWRITE - Static variable in class edu.sdsc.grid.gui.TransferStatusPanel
If the file exists, force it to be overwritten; if the file cannot be overwritten throw IOException.
overwrite - Variable in class edu.sdsc.grid.gui.TransferStatusPanel
Overwrite code, defaults to SKIP.
OWNER - Static variable in interface edu.sdsc.grid.io.GeneralMetaData
 
OWNER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
domain of data creator
OWNER_EMAIL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
email of data creator

P

PARENT_DATA_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
parent of a data type
PARENT_DIRECTORY_NAME - Static variable in interface edu.sdsc.grid.io.DirectoryMetaData
 
PARENT_DOMAIN_DESC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
parent of a domain
PARENT_RSRC_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
parent of a resource type
PARENT_SERVER_LOCATION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
parent of a location
PARENT_USER_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
parent of a user type
PASSWD_AUTH - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
Plain text password.
password - Variable in class edu.sdsc.grid.io.RemoteAccount
Currently, just the text password.
PATH_NAME - Static variable in interface edu.sdsc.grid.io.FileMetaData
 
PATH_SEPARATOR - Static variable in class edu.sdsc.grid.io.GeneralFile
Standard path separator character represented as a string for convenience.
PATH_SEPARATOR - Static variable in class edu.sdsc.grid.io.GeneralFileSystem
Standard path separator character represented as a string for convenience.
PATH_SEPARATOR - Static variable in class edu.sdsc.grid.io.irods.IRODSFile
Standard iRODS path separator character represented as a string for convenience.
PATH_SEPARATOR - Static variable in class edu.sdsc.grid.io.srb.SRBFileSystem
Deprecated. Use SRBFile separator and pathSeparator
PATH_SEPARATOR_CHAR - Static variable in class edu.sdsc.grid.io.GeneralFile
The path separator character.
PATH_SEPARATOR_CHAR - Static variable in class edu.sdsc.grid.io.irods.IRODSFile
The iRODS path separator character, '/'.
pathSeparator - Static variable in class edu.sdsc.grid.io.GeneralFile
The system-dependent path-separator character, represented as a string for convenience.
pathSeparator - Static variable in class edu.sdsc.grid.io.local.LocalFile
The system-dependent path-separator character, represented as a string for convenience.
pathSeparatorChar - Static variable in class edu.sdsc.grid.io.GeneralFile
The system-dependent path-separator character.
pathSeparatorChar - Static variable in class edu.sdsc.grid.io.local.LocalFile
The system-dependent path-separator character.
PHYSICAL_RESOURCE_DEFAULT_PATH - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
default path in physical resource
PHYSICAL_RESOURCE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
physical resource name
PHYSICAL_RESOURCE_TYPE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
physical resource type
port - Variable in class edu.sdsc.grid.io.RemoteAccount
The port to connect to on the server.
PORTAL_OFF - Static variable in class edu.sdsc.grid.io.srb.SRBFileSystem
Used for proxy commands, no result.
PORTAL_ON - Static variable in class edu.sdsc.grid.io.srb.SRBFileSystem
Used for proxy commands, create a portal and put it in env PORTAL_ENV.
PORTAL_STD_IN_OUT - Static variable in class edu.sdsc.grid.io.srb.SRBFileSystem
Used for proxy commands, send result to the InputStream
PRIMARY_SYNC - Static variable in class edu.sdsc.grid.io.srb.SRBContainer
Delete the cache copy once the copies have been synchronized.
print() - Static method in class edu.sdsc.grid.io.Host
Prints to System.out the attributes of the current host.
progressBars - Variable in class edu.sdsc.grid.gui.TransferStatusPanel
 
Protocol - Class in edu.sdsc.grid.io
 
Protocol(String, String) - Constructor for class edu.sdsc.grid.io.Protocol
 
ProtocolCatalog - Class in edu.sdsc.grid.io
The ProtocolCatalog stores all the metadata query protocols available for querying.
proxyDomainName - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The mdas domain home of the user.
proxyMcatZone - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The proxy mcat zone.
proxyUserName - Variable in class edu.sdsc.grid.io.srb.SRBAccount
The authorizing user name.
PURGE_SYNC - Static variable in class edu.sdsc.grid.io.srb.SRBContainer
Delete the cache copy once the copies have been synchronized.

Q

query(MetaDataCondition[], MetaDataSelect[]) - Method in class edu.sdsc.grid.io.GeneralFile
Queries the file server to find all files that match a set of conditions.
query(MetaDataSelect[]) - Method in class edu.sdsc.grid.io.GeneralFile
 
query(String[]) - Method in class edu.sdsc.grid.io.GeneralFile
 
query(MetaDataCondition[], MetaDataSelect[]) - Method in class edu.sdsc.grid.io.GeneralFileSystem
 
query(MetaDataCondition[], MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.GeneralFileSystem
 
query(MetaDataCondition[], MetaDataSelect[]) - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
 
query(MetaDataCondition[], MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
 
query(MetaDataCondition[], MetaDataSelect[]) - Method in class edu.sdsc.grid.io.local.LocalFileSystem
Queries the file system to find all files that match a set of conditions.
query(MetaDataCondition[], MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.local.LocalFileSystem
Queries the file system to find all files that match a set of conditions.
query(MetaDataSelect[]) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Removes the named file to this container
query(MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.srb.SRBContainer
 
query(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Queries metadata specific to this SRBFile object and selects one metadata value, fieldName, to be returned.
query(String[]) - Method in class edu.sdsc.grid.io.srb.SRBFile
Queries metadata specific to this SRBFile object.
query(MetaDataSelect) - Method in class edu.sdsc.grid.io.srb.SRBFile
Queries metadata specific to this SRBFile object and selects one metadata value, select, to be returned.
query(MetaDataSelect[]) - Method in class edu.sdsc.grid.io.srb.SRBFile
Queries metadata specific to this SRBFile object.
query(MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.srb.SRBFile
 
query(MetaDataCondition[], MetaDataSelect[]) - Method in class edu.sdsc.grid.io.srb.SRBFile
 
query(MetaDataCondition[], MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.srb.SRBFile
 
query(String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries all files in the metadata catalog and uses metadata values, fieldName, to be returned.
query(String[]) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries all files in the metadata catalog and uses metadata values, selects, to be returned.
query(MetaDataSelect) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries all files in the metadata catalog and uses one metadata value, select, to be returned.
query(MetaDataSelect[]) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries all files in the metadata catalog and uses metadata values, selects, to be returned.
query(MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries all files in the metadata catalog and uses metadata values, selects, to be returned.
query(MetaDataCondition[], MetaDataSelect[]) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries the file server to find all files that match a set of conditions.
query(MetaDataCondition[], MetaDataSelect[], int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries the file server to find all files that match a set of conditions.
query(MetaDataCondition[], MetaDataSelect[], int, boolean) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries the file server to find all files that match a set of conditions.
query(MetaDataCondition[], MetaDataSelect[], int, boolean, boolean) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Queries the file server to find all files that match a set of conditions.

R

R_ADJUST_BANDWIDTH_IN_MBITSPS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_CAPACITY_IN_GIGABYTES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_DESCRIPTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_LATENCY_MAX_IN_MILLISEC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_LATENCY_MIN_IN_MILLISEC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_LOCK - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_MAXIMUM_CONCURRENCY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_NUM_OF_HIERARCHIES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_NUM_OF_STRIPES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_ADJUST_RSRC_COMMENT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_BULK_INSERT_UDEF_META_DATA_FOR_RSRC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_CHANGE_LOCATION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_CHANGE_OWNER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_CHANGE_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_DELETE_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_DELETE_PHY_RSRC_FROM_LOG_RSRC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_DELETE_USER_DEFINED_ATTR_VAL_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_DELETE_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_INSERT_ACCS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_INSERT_FREE_SPACE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_INSERT_PHY_RSRC_INTO_LOG_RSRC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_INSERT_RSRC_USAGE_AND_QUOTA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_INSERT_RSRC_USAGE_TOTAL_BY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_INSERT_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
R_RENAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
RANGEPAIR - Static variable in class edu.sdsc.grid.io.MetaDataCondition
The value style for the field.
Styles include: SCALAR, RANGEPAIR, ENUM, TABLE.
read() - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Reads the next byte of data from the input stream.
read(byte[]) - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Reads some number of bytes from the input stream and stores them into the buffer array b.
read(byte[], int, int) - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Reads up to len bytes of data from the input stream into an array of bytes.
read() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads a byte of data from this file.
read(byte[], int, int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads up to len bytes of data from this file into an array of bytes.
read(byte[]) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads up to b.length bytes of data from this file into an array of bytes.
read() - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Reads the next byte of data from the input stream.
read(byte[], int, int) - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Reads up to len bytes of data from the input stream into an array of bytes.
read() - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Reads a byte of data from this file.
read() - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Reads a byte of data from this input stream.
read(byte[]) - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Reads up to b.length bytes of data from this input stream into an array of bytes.
read(byte[], int, int) - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Reads up to len bytes of data from the input stream into an array of bytes.
read() - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
 
read() - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Reads the next byte of data from the input stream.
read(byte[], int, int) - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Reads up to len bytes of data from the input stream into an array of bytes.
read() - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Reads a byte of data from this file.
readAuth(GeneralFile) - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Retrieve the Mdas authorization user password
readBoolean() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads a boolean from this file.
readBooleans(boolean[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads nValues input bytes, each one representing a boolean value, and set each value in a boolean array to true if the corresponding byte is nonzero, false if that byte is zero.
readByte() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads a signed eight-bit value from this file.
readBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads a sub array as a sequence of bytes.
readBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Reads a sub array as a sequence of bytes.
readBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
 
readBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Reads a sub array as a sequence of bytes.
readChar() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads a Unicode character from this file.
readDouble() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns a double value.
readDoubles(double[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of doubles.
readFloat() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns a float value.
readFloats(float[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of floats.
readFully(byte[]) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads b.length bytes from this file into the byte array, starting at the current file pointer.
readFully(byte[], int, int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads exactly len bytes from this file into the byte array, starting at the current file pointer.
readInt() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns an int value.
readInts(int[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of ints.
readLine() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads the next line of text from this file.
readLong() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns a long value.
readLongDouble() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns a signed value.
readLongDoubles(double[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of long doubles.
readLongLong() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns a signed value.
readLongLongs(long[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of long longs.
readLongs(long[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of longs.
readMdasAuth(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Retrieve the Mdas authorization user password
readShort() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns a short value.
readShorts(short[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of shorts.
readUnsignedByte() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads an unsigned eight-bit number from this file.
readUnsignedInt() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns an unsigned value.
readUnsignedInts(int[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of unsigned ints.
readUnsignedLong() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns an unsigned value.
readUnsignedLongLong() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns an unsigned value.
readUnsignedLongLongs(long[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of unsigned long longs.
readUnsignedLongs(long[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of unsigned longs.
readUnsignedShort() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and returns an unsigned value.
readUnsignedShorts(short[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Reads input bytes and sets nValues values in an array of unsigned shorts.
readUTF() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
 
REAL_DIRECTORY_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
fake
records - Variable in class edu.sdsc.grid.io.MetaDataRecordList
The query returned from the server might look like:
refresh(TreePath) - Method in class edu.sdsc.grid.gui.JargonTree
Reload the tree model from the filesystem.
register(String, long) - Method in class edu.sdsc.grid.io.srb.SRBFile
Registers the location of a file on a SRB physical resource.
registerURL(SRBFile, URL) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
If this resource is a 'http file system' type resource, then the url will be registered with that resource as the abstract pathname file.
RemoteAccount - Class in edu.sdsc.grid.io
An object to hold the user information used when connecting to a remote file system.
RemoteAccount(String, int, String, String, String) - Constructor for class edu.sdsc.grid.io.RemoteAccount
Constructs an object to hold the user information used when connecting to a remote server.
RemoteFile - Class in edu.sdsc.grid.io
An abstract representation of file and directory pathnames on a remote server.
RemoteFile(RemoteFileSystem, String) - Constructor for class edu.sdsc.grid.io.RemoteFile
Creates a new RemoteFile instance by converting the given pathname string into an abstract pathname.
RemoteFile(RemoteFileSystem, String, String) - Constructor for class edu.sdsc.grid.io.RemoteFile
Creates a new RemoteFile instance from a parent pathname string and a child pathname string.
RemoteFile(RemoteFile, String) - Constructor for class edu.sdsc.grid.io.RemoteFile
Creates a new RemoteFile instance from a parent abstract pathname and a child pathname string.
RemoteFile(URI) - Constructor for class edu.sdsc.grid.io.RemoteFile
Creates a new RemoteFile instance by converting the given file: URI into an abstract pathname.
RemoteFileInputStream - Class in edu.sdsc.grid.io
A GeneralFileInputStream obtains input bytes from a file in a file system.
RemoteFileInputStream(GeneralFileSystem, String) - Constructor for class edu.sdsc.grid.io.RemoteFileInputStream
Creates a RemoteFileInputStream by opening a connection to an actual file, the file named by the path name name in the file system.
RemoteFileInputStream(GeneralFile) - Constructor for class edu.sdsc.grid.io.RemoteFileInputStream
Creates a RemoteFileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
RemoteFileOutputStream - Class in edu.sdsc.grid.io
A RemoteFileOutputStream writes bytes to a file in a file system.
RemoteFileOutputStream(GeneralFileSystem, String) - Constructor for class edu.sdsc.grid.io.RemoteFileOutputStream
Creates a FileOuputStream by opening a connection to an actual file, the file named by the path name name in the file system.
RemoteFileOutputStream(GeneralFile) - Constructor for class edu.sdsc.grid.io.RemoteFileOutputStream
Creates a FileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
RemoteFileSystem - Class in edu.sdsc.grid.io
The RemoteFileSystem class is the common superclass for connection implementations to remote file systems.
RemoteFileSystem() - Constructor for class edu.sdsc.grid.io.RemoteFileSystem
 
RemoteRandomAccessFile - Class in edu.sdsc.grid.io
An abstract class which extends GeneralRandomAccessFile to create remote random access files.
RemoteRandomAccessFile(RemoteFile, String) - Constructor for class edu.sdsc.grid.io.RemoteRandomAccessFile
Doesn't really do much, perhaps in the future.
removeCellEditorListener(CellEditorListener) - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Removes a CellEditorListener from the listener list.
removeRecord(int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
removeRecord(MetaDataField) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
removeRow(int) - Method in class edu.sdsc.grid.io.MetaDataTable
Removes the row specified by index from this table.
removeTreeModelListener(TreeModelListener) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Removes a listener previously added with addTreeModelListener().
renameTo(GeneralFile) - Method in class edu.sdsc.grid.io.GeneralFile
Renames the file denoted by this abstract pathname.
renameTo(GeneralFile) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Renames the file denoted by this abstract pathname.
renameTo(GeneralFile) - Method in class edu.sdsc.grid.io.local.LocalFile
Renames the file denoted by this abstract pathname.
renameTo(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Renames the container denoted by this abstract pathname.
renameTo(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBFile
Renames the file denoted by this abstract pathname.
replicate(String) - Method in class edu.sdsc.grid.io.irods.IRODSFile
 
replicate(String) - Method in class edu.sdsc.grid.io.RemoteFile
Replicates this RemoteFile to a new resource.
replicate(String) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Replicates this container to a new resource.
replicate(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Replicates this SRBFile to a new resource.
RESOURCE_ACCESS_CONSTRAINT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
resource access constraint name
RESOURCE_ACCESS_LIST - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
access list for resource
RESOURCE_ACCESS_PRIVILEGE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
resource access privilege
RESOURCE_ADDRESS_NETPREFIX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
net address of resource
RESOURCE_BANDWIDTH - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
physical resource estimated bandwidth
RESOURCE_CAPACITY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
capacity of the physical resource
RESOURCE_CLASS - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_CLASS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
classification of resource
RESOURCE_COMMENTS - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_CREATE_DATE - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_DEFAULT_PATH - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
default path in logical resource
RESOURCE_DESCRIPTION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
comments on the resource
RESOURCE_FREE_SPACE - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_GROUP - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_GROUP_ID - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_INFO - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_LOCATION - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_MAX_CONCURRENCY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
physical resource maximum concurrent requests
RESOURCE_MAX_LATENCY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
physical resource estimated latency max
RESOURCE_MIN_LATENCY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
physical resource estimated latency min
RESOURCE_MODIFY_DATE - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_NAME - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_NUM_OF_HIERARCHIES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
number of hierarchies in the physical resource
RESOURCE_NUM_OF_STRIPES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
number of striping of data in the physical resource
RESOURCE_OWNER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
domain of the log resource
RESOURCE_OWNER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
owner of the log resource
RESOURCE_REPLICATION_ENUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
index of physical resource in logical resource
RESOURCE_STATUS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
resource status
RESOURCE_TYPE - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_TYPE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
logical resource type
RESOURCE_UDEF_MDATA_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-def metadata for resource mod
RESOURCE_VAULT_PATH - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
RESOURCE_ZONE - Static variable in interface edu.sdsc.grid.io.ResourceMetaData
 
ResourceMetaData - Interface in edu.sdsc.grid.io
The metadata naming interface for resource metadata.
roots - Static variable in class edu.sdsc.grid.io.GeneralFileSystem
Store the abstract pathnames for the root directories of this file system.
RSRC_ACCESS_CONSTRAINT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
RSRC_ACCESS_ID - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
access id number for resource access
RSRC_ACCESS_PRIVILEGE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
RSRC_ACCS_GRPUSER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
resource group user domain
RSRC_ACCS_GRPUSER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
group user who has access to resource
RSRC_ACCS_GRPUSER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
resource group user zone
RSRC_ACCS_USER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user domn used for resource access
RSRC_ACCS_USER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user name used for resource access
RSRC_ACCS_USER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user zone used for resource access
RSRC_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
comments on log resource
RSRC_CONCURRENCY_MAX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
max concurrency allowed in resource
RSRC_CREATE_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
log resource creation timestamp
RSRC_MAX_OBJ_SIZE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
log resource max obj size
RSRC_MBPS_BANDWIDTH - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
bandwidth of resource in mega bps
RSRC_MEGAB_CAPACITY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
capacity of resource in megabytes
RSRC_MLSEC_LATENCY_MAX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
max latency of resource in millisec
RSRC_MLSEC_LATENCY_MIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
min latency of resource in millisec
RSRC_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
log resource modify timestamp
RSRC_NUM_OF_HIERARCHIES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
num of staging levels in resource
RSRC_NUM_OF_STRIPES - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
num of striping done in resource
RSRC_OWNER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
RSRC_OWNER_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
RSRC_OWNER_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for resource owner
RSRC_UDEF_MDATA_CREATE_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
RSRC_UDEF_MDATA_CREATE_DATE
RSRC_UDEF_MDATA_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
run() - Method in class edu.sdsc.grid.gui.TransferStatusPanel
This is to help show that the application has not frozen
rw - Variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
0, if read only 1, if read/write 2, if sync r/w 3, dsync r/w
rwCheck(GeneralFile, String) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Sets the boolean rw value according to the mode and checks that such permissions are available.

S

SCALAR - Static variable in class edu.sdsc.grid.io.MetaDataCondition
The value style for the field.
Styles include: SCALAR, RANGEPAIR, ENUM, TABLE.
seek(long) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Sets the file-pointer offset, measured from the beginning of this file, at which the next read or write occurs.
seek(long, int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Sets the file-pointer offset at which the next read or write occurs.
seek(long, int) - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Sets the file-pointer offset at which the next read or write occurs.
seek(long) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
Sets the file-pointer offset, measured from the beginning of this file, at which the next read or write occurs.
seek(long, int) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
Sets the file-pointer offset at which the next read or write occurs.
seek(long, int) - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Sets the file-pointer offset at which the next read or write occurs.
SEEK_CURRENT - Static variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Used to set the offset for seek calls to the current offset of the file.
SEEK_END - Static variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Used to set the offset for seek calls to the end of the file.
SEEK_START - Static variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Used to set the offset for seek calls to the beginning of the file.
SelectionChooser - Class in edu.sdsc.grid.gui
A gui component for choosing metadata query components.
SelectionChooser() - Constructor for class edu.sdsc.grid.gui.SelectionChooser
Default chooser, displays the selection chooser with all the metadata groups and fields available.
SelectionChooser(MetaDataGroup[]) - Constructor for class edu.sdsc.grid.gui.SelectionChooser
Displays the selection chooser with the MetaDataGroups available determined by the groups array.
SelectionChooser(MetaDataField[]) - Constructor for class edu.sdsc.grid.gui.SelectionChooser
Constructs the SelectionChooser without seperating the fields by group.
separator - Static variable in class edu.sdsc.grid.io.GeneralFile
The system-dependent default name-separator character, represented as a string for convenience.
separator - Static variable in class edu.sdsc.grid.io.local.LocalFile
The system-dependent default name-separator character, represented as a string for convenience.
separatorChar - Static variable in class edu.sdsc.grid.io.GeneralFile
The system-dependent default name-separator character.
separatorChar - Static variable in class edu.sdsc.grid.io.local.LocalFile
The system-dependent default name-separator character.
SERVER_LOCATION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
location of SRB server
SERVER_NETPREFIX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
net address of SRB server
serverDN - Variable in class edu.sdsc.grid.io.irods.IRODSAccount
The iRODS Server DN string.
setAccount(GeneralAccount) - Method in class edu.sdsc.grid.io.GeneralFileSystem
Sets the account object, the info used to connect to the file system.
setAccount(GeneralAccount) - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Loads the account information for this file system.
setAccount(GeneralAccount) - Method in class edu.sdsc.grid.io.local.LocalFileSystem
Sets the account object.
setAccount(GeneralAccount) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Loads the account information for this file system.
setAuthenticationScheme(String) - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Set the type of authentication used.
setBinaryDataFormat(BinaryDataFormat) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Sets the binary data format for data read from and written to the random access file.
setCertificateAuthority(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the locations of the GSI Certificate Authority (CA).
setContainerMaxSize(long) - Method in class edu.sdsc.grid.io.srb.SRBContainer
Sets the container size of this SRBContainer object, in bytes.
setDataType(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Sets the dataType string of this SRBFile.
setDefaultStorageResource(String) - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Sets the default storage resource.
setDefaultStorageResource(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the default storage resource.
setDirectory(String) - Method in class edu.sdsc.grid.io.GeneralFile
Abstract method to set the directory.
setDirectory(String) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Set the directory.
setDirectory(String) - Method in class edu.sdsc.grid.io.local.LocalFile
Set the directory.
setDirectory(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Set the directory.
setDomainName(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the domain name used by the client.
setDoubleSize(int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Sets the number of bytes occupied by a double-precision float.
setExecFile(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the exec file.
setExtensibleSchema(GeneralFileSystem, String) - Static method in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
setExtensibleSchema(GeneralFileSystem, String[]) - Static method in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
setFileName(String) - Method in class edu.sdsc.grid.io.GeneralFile
Abstract method to set the file name.
setFileName(String) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Set the file name.
setFileName(String) - Method in class edu.sdsc.grid.io.local.LocalFile
Set the file name.
setFileName(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Set the file name.
setFileSystem(GeneralFileSystem) - Method in class edu.sdsc.grid.io.GeneralFile
Sets the file system used of this GeneralFile object.
setFileSystem(GeneralFileSystem) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Sets the file system used of this GeneralFile object.
setFileSystem(GeneralFileSystem) - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Sets the IRODS server used of this IRODSRandomAccessFile object.
setFileSystem(GeneralFileSystem) - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Sets the IRODS server used of this IRODSRandomAccessFile object.
setFileSystem(GeneralFileSystem) - Method in class edu.sdsc.grid.io.srb.SRBFile
Sets the SRB server used of this SRBFile object.
setFileSystem(GeneralFileSystem) - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Sets the SRB server used of this SRBRandomAccessFile object.
setFileSystem(GeneralFileSystem) - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Sets the SRB server used of this SRBRandomAccessFile object.
setFirewallPorts(int, int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Used to specify a port range available through a firewall.
setFloatSize(int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Sets the number of bytes occupied by a single-precision float.
setGSSCredential(Object) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Allows a GSSCredential to be used to make a GSI authentication.
setHomeDirectory(String) - Method in class edu.sdsc.grid.io.GeneralAccount
Sets the home directory of this GeneralAccount.
setHomeDirectory(String) - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Sets the home directory of this RemoteAccount.
setHomeDirectory(String) - Method in class edu.sdsc.grid.io.local.LocalAccount
Sets the home directory of this GeneralAccount.
setHomeDirectory(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the home directory of this RemoteAccount.
setHost(String) - Method in class edu.sdsc.grid.io.RemoteAccount
Sets the host of this RemoteAccount.
setIntSize(int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Sets the number of bytes occupied by an integer.
setLastModified(long) - Method in class edu.sdsc.grid.io.GeneralFile
Sets the last-modified time of the file or directory named by this abstract pathname.
setLastModified(long) - Method in class edu.sdsc.grid.io.local.LocalFile
Sets the last-modified time of the file or directory named by this abstract pathname.
setLastModified(long) - Method in class edu.sdsc.grid.io.srb.SRBFile
This method will only change the lastModified time to the current time.
setLBFByteOrder() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Selects the byte order for binary data to be Least-significant-Byte-First (LBF).
setLength(long) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Sets the length of this file.
setLength(long) - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Sets the length of this file.
setLength(long) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
Sets the length of this file.
setLength(long) - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Sets the length of this file.
setLength(long) - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
Sets the length of this file.
setLongDoubleSize(int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Sets the number of bytes occupied by a long double-precision float.
setLongLongSize(int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Sets the number of bytes occupied by a long long integer.
setLongSize(int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Sets the number of bytes occupied by a long integer.
setMBFByteOrder() - Method in class edu.sdsc.grid.io.BinaryDataFormat
Selects the byte order for binary data to be Most-significant-Byte-First (MBF).
setMcatZone(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the client mcat zone.
setMdasUserInfo(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Reads the Mdas enviroment file, then sets the user info variables.
setOptions(int) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Set the type of authentication used, e.g.
setOverwrite(int) - Method in class edu.sdsc.grid.gui.TransferStatusPanel
If the file exists: If overwrite, force it to be overwritten; if the file cannot be overwritten throw IOException.
If append, the source file will be appended to the destination file.
setPassword(String) - Method in class edu.sdsc.grid.io.RemoteAccount
Sets the client password.
setPort(int) - Method in class edu.sdsc.grid.io.RemoteAccount
Sets the port of this RemoteAccount.
setProxyDomainName(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the proxy domain name.
setProxyMcatZone(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the proxy mcat zone.
setProxyUserName(String) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the proxy user name.
setQueryRecordsWanted(int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Sets the default number of records that will be returned by a query.
setReadOnly() - Method in class edu.sdsc.grid.io.GeneralFile
Marks the file or directory named by this abstract pathname so that only read operations are allowed.
setReadOnly() - Method in class edu.sdsc.grid.io.local.LocalFile
Marks the file or directory named by this abstract pathname so that only read operations are allowed.
setReadOnly() - Method in class edu.sdsc.grid.io.srb.SRBFile
Marks the file or directory named by this abstract pathname so that only read operations are allowed.
setReplicaNumber(int) - Method in class edu.sdsc.grid.io.srb.SRBFile
Sets the specific physical data replication refered to by this object.
setResource(String) - Method in class edu.sdsc.grid.io.irods.IRODSFile
Sets the physical resource this IRODSFile object will be stored on.
setResource(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
Sets the physical resource this SRBFile object will be stored on.
setRoot(Object) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Change the root of the tree.
setServerLocalPath(String) - Method in class edu.sdsc.grid.io.srb.SRBFile
The local filepath of the data when logged on the SRB server.
setShortSize(int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Sets the number of bytes occupied by a short integer.
setSleepLength(int) - Method in class edu.sdsc.grid.gui.TransferStatusPanel
Time that threads will sleep.
setStringValue(int, int, String) - Method in class edu.sdsc.grid.io.MetaDataTable
 
setUserInfo(GeneralFile) - Method in class edu.sdsc.grid.io.irods.IRODSAccount
Reads the iRODS enviroment files to set the user info.
setUserInfo(GeneralFile) - Method in class edu.sdsc.grid.io.srb.SRBAccount
Reads the Mdas enviroment files, then set the user info.
setUserName(String) - Method in class edu.sdsc.grid.io.RemoteAccount
Sets the userName of this RemoteAccount.
setValue(int, int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
setValue(int, float) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
setValue(int, String) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
setValue(int, MetaDataTable) - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
setValue(MetaDataField, int) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Changes the value in this MetaDataRecordList for the approproate field.
setValue(MetaDataField, float) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Changes the value in this MetaDataRecordList for the approproate field.
setValue(MetaDataField, String) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Changes the value in this MetaDataRecordList for the approproate field.
setValue(MetaDataField, MetaDataTable) - Method in class edu.sdsc.grid.io.MetaDataRecordList
Changes the value in this MetaDataRecordList for the approproate field.
setVersion(String) - Static method in class edu.sdsc.grid.io.srb.SRBAccount
Sets the version.
setWriteBufferSize(int) - Static method in class edu.sdsc.grid.io.srb.SRBFileSystem
Set the buffer size used by the SRB socket write.
setZone(String) - Method in class edu.sdsc.grid.io.irods.IRODSAccount
 
SHORT - Static variable in class edu.sdsc.grid.io.Host
A language primitive signed or unsigned short integer.
shortValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary short value contained in the byte array, and described by this binary data format, into a short in the host's native binary data format.
shortValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary short value contained in the byte array, and described by this binary data format, into a short in the host's native binary data format.
shortValues(byte[], short[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary short values contained in the byte array, and described by this binary data format, into an array of shorts in the host's native binary data format.
shouldSelectCell(EventObject) - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Returns true.
showMetaData() - Method in class edu.sdsc.grid.gui.JargonTreeModel
Returns if this treemodel will show metadata.
SIZE - Static variable in interface edu.sdsc.grid.io.GeneralMetaData
 
SKIP - Static variable in class edu.sdsc.grid.gui.TransferStatusPanel
If the file exists, ignore it and go to the next.
skip(long) - Method in class edu.sdsc.grid.io.GeneralFileInputStream
Skips over and discards n bytes of data from this input stream.
skip(long) - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
Skips over and discards n bytes of data from the input stream.
skip(long) - Method in class edu.sdsc.grid.io.local.LocalFileInputStream
Skips over and discards n bytes of data from the input stream.
skip(long) - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
Skips over and discards n bytes of data from the input stream.
skipBytes(int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Attempts to skip over n bytes of input discarding the skipped bytes.
skipBytes(int) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
 
SOUNDS_LIKE - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"sounds like", Implement phonetic name searches
SOUNDS_NOT_LIKE - Static variable in class edu.sdsc.grid.io.MetaDataCondition
"not sounds like", Implement phonetic name searches
sources - Variable in class edu.sdsc.grid.gui.TransferStatusPanel
 
SRB_ROOT - Static variable in class edu.sdsc.grid.io.srb.SRBFileSystem
The SRB only has one root, "/".
SRB_VERSION_1_1_8 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
SRB version 1.1.8.
SRB_VERSION_2 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
All SRB version 2
SRB_VERSION_3 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
SRB version 3.0.0
SRB_VERSION_3_0_2 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
SRB version 3.0.2 to version 3.2
SRB_VERSION_3_3 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
SRB version 3.3
SRB_VERSION_3_3_1 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
SRB version 3.3.1
SRB_VERSION_3_4 - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
SRB version 3.4 (same as SRB_VERSION_3_3_1)
SRBAccount - Class in edu.sdsc.grid.io.srb
This class extends the RemoteAccount class, adding those values necessary to open a connection to the SRB.
SRBAccount() - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
This constructor uses the default info found in the Mdas files in the user's local home directory.
SRBAccount(String) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(File) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(GeneralFile) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(String, String) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(File, File) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(GeneralFile, GeneralFile) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(String, int, String, String, String, String, String) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(String, int, String, String, String, String, String, String) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(String, int, Object) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBAccount(String, int, Object, String, String, int) - Constructor for class edu.sdsc.grid.io.srb.SRBAccount
Creates an object to hold SRB account information.
SRBContainer - Class in edu.sdsc.grid.io.srb
An abstract representation of a container on the SRB.
SRBContainer(SRBFileSystem, String) - Constructor for class edu.sdsc.grid.io.srb.SRBContainer
Creates a new SRBContainer instance by converting the given pathname string into an abstract pathname.
SRBContainer(SRBFileSystem, String, long) - Constructor for class edu.sdsc.grid.io.srb.SRBContainer
Creates a new SRBContainer instance by converting the given pathname string into an abstract pathname.
SRBContainer(SRBFile, String) - Constructor for class edu.sdsc.grid.io.srb.SRBContainer
Creates a new SRBContainer instance by converting the given pathname string into an abstract pathname.
SRBContainer(SRBFile, String, long) - Constructor for class edu.sdsc.grid.io.srb.SRBContainer
Creates a new SRBContainer instance by converting the given pathname string into an abstract pathname.
SRBContainer(SRBFileSystem, String, String) - Constructor for class edu.sdsc.grid.io.srb.SRBContainer
Creates a new SRBContainer instance by converting the given pathname string into an abstract pathname.
SRBContainer(SRBFileSystem, String, String, long) - Constructor for class edu.sdsc.grid.io.srb.SRBContainer
Creates a new SRBContainer instance by converting the given pathname string into an abstract pathname.
SRBContainer(URI) - Constructor for class edu.sdsc.grid.io.srb.SRBContainer
Creates a new SRBContainer instance by converting the given uri string into an abstract pathname.
srbDeleteValue(int, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Delete a Value; a single MCAT entry.
SRBException - Exception in edu.sdsc.grid.io.srb
This class encompasses the legacy errors that can be returned by the SRB server.
SRBException(String) - Constructor for exception edu.sdsc.grid.io.srb.SRBException
Construct a SRBException.
SRBException(String, int) - Constructor for exception edu.sdsc.grid.io.srb.SRBException
Construct an SRBException.
SRBException(int) - Constructor for exception edu.sdsc.grid.io.srb.SRBException
Construct an SRBException with an empty message of the specified type.
SRBFile - Class in edu.sdsc.grid.io.srb
An abstract representation of file and directory pathnames on the SRB.
SRBFile(SRBFileSystem, String) - Constructor for class edu.sdsc.grid.io.srb.SRBFile
Creates a new SRBFile instance by converting the given pathname string into an abstract pathname.
SRBFile(SRBFileSystem, String, String) - Constructor for class edu.sdsc.grid.io.srb.SRBFile
Creates a new SRBFile instance from a parent pathname string and a child pathname string.
SRBFile(SRBFile, String) - Constructor for class edu.sdsc.grid.io.srb.SRBFile
Creates a new SRBFile instance from a parent abstract pathname and a child pathname string.
SRBFile(URI) - Constructor for class edu.sdsc.grid.io.srb.SRBFile
Creates a new GeneralFile instance by converting the given file: URI into an abstract pathname.
SRBFileInputStream - Class in edu.sdsc.grid.io.srb
A SRBFileInputStream obtains input bytes from a file in a SRB file system.
SRBFileInputStream(SRBFileSystem, String) - Constructor for class edu.sdsc.grid.io.srb.SRBFileInputStream
Creates a SRBFileInputStream by opening a connection to an actual file, the file named by the path name name in the file system.
SRBFileInputStream(SRBFile) - Constructor for class edu.sdsc.grid.io.srb.SRBFileInputStream
Creates a SRBFileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
SRBFileOutputStream - Class in edu.sdsc.grid.io.srb
A SRBFileOutputStream writes bytes to a file in a file system.
SRBFileOutputStream(SRBFileSystem, String) - Constructor for class edu.sdsc.grid.io.srb.SRBFileOutputStream
Creates a FileOuputStream by opening a connection to an actual file, the file named by the path name name in the file system.
SRBFileOutputStream(SRBFile) - Constructor for class edu.sdsc.grid.io.srb.SRBFileOutputStream
Creates a FileInputStream by opening a connection to an actual file, the file named by the File object file in the file system.
srbFileSystem - Variable in class edu.sdsc.grid.io.srb.SRBFile
Holds the server object used by this srb file.
SRBFileSystem - Class in edu.sdsc.grid.io.srb
The SRBFileSystem class is the class for connection implementations to SRB servers.
SRBFileSystem() - Constructor for class edu.sdsc.grid.io.srb.SRBFileSystem
Opens a socket connection to read from and write to.
SRBFileSystem(SRBAccount) - Constructor for class edu.sdsc.grid.io.srb.SRBFileSystem
Opens a socket connection to read from and write to.
srbGetUserByDn(int, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Get the zone and user@domain given the user's dn
srbIngestToken(String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Ingest Token.
SRBMetaDataRecordList - Class in edu.sdsc.grid.io.srb
Results of long queries will only return a partial list to save on bandwidth which can be iterated through by further calls to the server.
SRBMetaDataRecordList(MetaDataField, int) - Constructor for class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
SRBMetaDataRecordList(MetaDataField, float) - Constructor for class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
SRBMetaDataRecordList(MetaDataField, Integer) - Constructor for class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
SRBMetaDataRecordList(MetaDataField, Float) - Constructor for class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
SRBMetaDataRecordList(MetaDataField, String) - Constructor for class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
SRBMetaDataRecordList(MetaDataField, MetaDataTable) - Constructor for class edu.sdsc.grid.io.srb.SRBMetaDataRecordList
Create a new MetaDataRecordList with this field and recordValue.
SRBMetaDataSet - Class in edu.sdsc.grid.io.srb
SRBMetaDataSet registers all the SRB metadata fields.
srbModifyRescInfo(int, String, int, String, String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Modify/create/delete a SRB resource.
srbModifyUser(int, String, String, int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Modify a user info.
srbModifyZone(int, String, String, String, String, String, String, int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Modify and Insert SRB zone and zone information in the Metadata Catalog.
SRBProtocol - Class in edu.sdsc.grid.io.srb
 
SRBProtocol() - Constructor for class edu.sdsc.grid.io.srb.SRBProtocol
 
SRBRandomAccessFile - Class in edu.sdsc.grid.io.srb
Instances of this class support both reading and writing to a SRB random access file.
SRBRandomAccessFile(SRBFileSystem, String, String) - Constructor for class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, a file with the specified name.
SRBRandomAccessFile(SRBFile, String) - Constructor for class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Creates a random access file stream to read from, and optionally to write to, a file with the specified name.
srbRegisterLocation(String, String, String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Register location information.
srbRegisterLogicalResource(String, String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Register Logical Resource.
srbRegisterReplicateResourceInfo(String, String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
srbRegisterReplicateResourceInfo Input - String physicalRescName - The physical resource name.
srbRegisterResource(String, String, String, String, String, int) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Register Resource.
srbRegisterUser(int, String, String, String, String, String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Register a user.
srbRegisterUserGrp(int, String, String, String, String, String, String) - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Register a user group
SRBShadowFile - Class in edu.sdsc.grid.io.srb
If the SRBShadowFile refers to a file, this class can obtain input bytes from a shadow file in a SRB file system.
SRBShadowFile(SRBFile, String) - Constructor for class edu.sdsc.grid.io.srb.SRBShadowFile
Creates a random access file stream to read from, a shadow file object with the specified name.
SRBShadowFile(SRBShadowFile, String) - Constructor for class edu.sdsc.grid.io.srb.SRBShadowFile
Creates a random access file stream to read from, a shadow file object with the specified name.
StandardMetaData - Interface in edu.sdsc.grid.io
 
start() - Method in class edu.sdsc.grid.gui.TransferStatusPanel
 
stopCellEditing() - Method in class edu.sdsc.grid.gui.JargonTreeCellEditor
Returns true.
STRING - Static variable in class edu.sdsc.grid.io.MetaDataField
The value type for the field.
STRUCTURED_METADATA_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
comments on the structured metadata in STRUCTURED_METADATA_FILE_NAME or INTERNAL_STRUCTURED_METADATA
STRUCTURED_METADATA_DIRECTORY_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection name of user-inserted structured metadata stored as another data object inside SRB see also STRUCTURED_METADATA_FILE_NAME
STRUCTURED_METADATA_FILE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data name of user-inserted structured metadata stored as another data object inside SRB see also STRUCTURED_METADATA_DIRECTORY_NAME
STRUCTURED_METADATA_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
type of user-inserted structured metadata for data in STRUCTURED_METADATA_FILE_NAME or INTERNAL_STRUCTURED_METADATA
SU_CHANGE_PASSWORD - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
subList - Variable in class edu.sdsc.grid.gui.SelectionChooser
If the mainList holds groups, this will hold the fields of the group selected.
swap(byte[], int) - Static method in class edu.sdsc.grid.io.Host
Reverses the byte order of the first nBytes of the byte array.
swap(byte[], int, int) - Static method in class edu.sdsc.grid.io.Host
Reverses the byte order of nBytes of the byte array, starting at the given offset.
swapMultiple(byte[], int, int) - Static method in class edu.sdsc.grid.io.Host
Reverses the byte order of nBytes of the byte array, doing it nTimes in a row for consecutive runs of nBytes.
swapMultiple(byte[], int, int, int) - Static method in class edu.sdsc.grid.io.Host
Reverses the byte order of nBytes of the byte array, starting at the given offset, and doing it nTimes in a row for consecutive runs of nBytes.
swapNeeded - Variable in class edu.sdsc.grid.io.GeneralRandomAccessFile
Holds a true if the host and file formats have reversed byte orders, forcing bytes to have their order swapped on reads and writes.

T

T_DELETE_TAPE_INFO - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
T_INSERT_TAPE_INFO - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
T_UPDATE_TAPE_INFO - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
T_UPDATE_TAPE_INFO_2 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
TABLE - Static variable in class edu.sdsc.grid.io.MetaDataCondition
Table represents both a style and type.
TABLE - Static variable in class edu.sdsc.grid.io.MetaDataField
The value type for the field.
TAPE_BYTES_WRITTEN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
tape bytes written
TAPE_CURRENT_ABS_POSITION - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
tape current abs position
TAPE_CURRENT_FILE_SEQNUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
tape current file seqnum
TAPE_FULLFLAG - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
tape fullflag
TAPE_LIBINX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
tape libinx
TAPE_NUMBER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
tape number
TAPE_OWNER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
tape owner
TAPE_TYPE_VAL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
TAPE_TYPE_VAL
TICKET_ACC_COUNT_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
valid number of opens allowed on data in collection
TICKET_ACC_COUNT_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
valid number of opens allowed on data ticket
TICKET_ACC_LIST_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
valid access allowed on data in collection currently readonly
TICKET_ACC_LIST_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
valid access allowed on data ticket currently readonly
TICKET_BEGIN_TIME_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection ticket validity start time
TICKET_BEGIN_TIME_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data ticket validity start time
TICKET_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
identifier for ticket given for collection and sub collections
TICKET_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
identifier for ticket given for data
TICKET_DIRECTORY_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
ticket collction comments
TICKET_DIRECTORY_CREATE_TIMESTAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
ticket collction timestamp
TICKET_DIRECTORY_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection for ticket
TICKET_END_TIME_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection ticket validity end time
TICKET_END_TIME_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data ticket validity end time
TICKET_OWNER_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection ticket creator
TICKET_OWNER_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data ticket creator
TICKET_OWNER_DOMAIN_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection ticket creator domain
TICKET_OWNER_DOMAIN_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data ticket creator domain
TICKET_OWNER_ZONE_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for coll ticket owner
TICKET_OWNER_ZONE_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for data ticket owner
TICKET_RECURSIVE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
recursive flag for C_TICKET
TICKET_USER_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
allowed collection ticket user
TICKET_USER_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
allowed ticket user or user group
TICKET_USER_DOMAIN_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
collection ticket user domain
TICKET_USER_DOMAIN_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
data ticket user domain
TICKET_USER_ZONE_C - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for coll ticket user
TICKET_USER_ZONE_D - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone for data ticket user
TOP_LEVEL - Static variable in class edu.sdsc.grid.gui.JargonTreeModel
Top level name for trees with multiple GeneralFile roots.
toString(byte[]) - Static method in class edu.sdsc.grid.io.Base64
Convert binary data to a base64-encoded String
toString() - Method in class edu.sdsc.grid.io.GeneralFile
Returns the pathname string of this abstract pathname.
toString() - Method in class edu.sdsc.grid.io.GeneralFileSystem
Returns a string representation of this file system object.
toString() - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
 
toString() - Method in class edu.sdsc.grid.io.irods.IRODSFile
Returns a string representation of this file object.
toString() - Method in class edu.sdsc.grid.io.irods.IRODSFileInputStream
 
toString() - Method in class edu.sdsc.grid.io.irods.IRODSFileSystem
Returns a string representation of this file system object.
toString() - Method in class edu.sdsc.grid.io.local.LocalFile
Returns the pathname string of this abstract pathname.
toString() - Method in class edu.sdsc.grid.io.MetaDataCondition
Returns a string representation of the object.
toString() - Method in class edu.sdsc.grid.io.MetaDataField
Returns a string representation of the object.
toString() - Method in class edu.sdsc.grid.io.MetaDataGroup
Returns a string representation of the object.
toString() - Method in class edu.sdsc.grid.io.MetaDataRecordList
 
toString() - Method in class edu.sdsc.grid.io.MetaDataSelect
Returns a string representation of the object.
toString() - Method in class edu.sdsc.grid.io.MetaDataTable
 
toString() - Method in class edu.sdsc.grid.io.Protocol
 
toString() - Method in class edu.sdsc.grid.io.srb.SRBAccount
Returns a string representation of this file system object.
toString() - Method in exception edu.sdsc.grid.io.srb.SRBException
Returns a string representation of the object.
toString() - Method in class edu.sdsc.grid.io.srb.SRBFile
Returns a string representation of this file object.
toString() - Method in class edu.sdsc.grid.io.srb.SRBFileInputStream
 
toString() - Method in class edu.sdsc.grid.io.srb.SRBFileSystem
Returns a string representation of this file system object.
toString() - Method in class edu.sdsc.grid.io.srb.SRBShadowFile
 
toURI() - Method in class edu.sdsc.grid.io.GeneralFile
Constructs a file: URI that represents this abstract pathname.
toURI() - Method in class edu.sdsc.grid.io.local.LocalFile
Constructs a file: URI that represents this abstract pathname.
toURI() - Method in class edu.sdsc.grid.io.srb.SRBFile
Constructs a file: URI that represents this abstract pathname.
toURL() - Method in class edu.sdsc.grid.io.GeneralFile
Converts this abstract pathname into a file: URL.
toURL() - Method in class edu.sdsc.grid.io.local.LocalFile
Converts this abstract pathname into a file: URL.
toURL() - Method in class edu.sdsc.grid.io.srb.SRBFile
Converts this abstract pathname into a file: URL.
TransferStatusPanel - Class in edu.sdsc.grid.gui
Displays the progress of files being copied.
TransferStatusPanel(GeneralFile) - Constructor for class edu.sdsc.grid.gui.TransferStatusPanel
Creates a GUI panel to transfer the source file to the current location on the local filesystem.
TransferStatusPanel(GeneralFile[]) - Constructor for class edu.sdsc.grid.gui.TransferStatusPanel
Creates a GUI panel to transfer the sources files to the current location on the local filesystem.
TransferStatusPanel(GeneralFile, GeneralFile) - Constructor for class edu.sdsc.grid.gui.TransferStatusPanel
Creates a GUI panel to transfer the source file to the destination file.
TransferStatusPanel(GeneralFile[], GeneralFile[]) - Constructor for class edu.sdsc.grid.gui.TransferStatusPanel
Creates a GUI panel to transfer the sources files to the destinations.

U

U_ADD_GROUP_OWNER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_BULK_INSERT_UDEF_META_DATA_FOR_USER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_CHANGE_ENCKEY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_CHANGE_INFO - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_CHANGE_PASSWORD - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_CHANGE_TYPE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_CHANGE_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_CHANGE_VERKEY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_DELETE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_DELETE_ALIAS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_DELETE_AUTH_MAP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_DELETE_DOMN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_DELETE_GROUP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_DELETE_USER_DEFINED_ATTR_VAL_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_DELETE_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_INSERT_ALIAS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_INSERT_AUTH_MAP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_INSERT_DOMN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_INSERT_GROUP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_INSERT_USER_DEFINED_STRING_META_DATA - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_REMOVE_GROUP_OWNER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_UPDATE_ADDRESS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_UPDATE_EMAIL - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
U_UPDATE_PHONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
UDIMD_RESOURCE1 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
change MAX_RSRC_INTEGER_METADATA
UDIMD_RSRC1 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
UDIMD_USER1 - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
change MAX_USER_INTEGER_METADATA
unsignedIntValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned integer value contained in the byte array, and described by this binary data format, into an unsigned integer in the host's native binary data format.
unsignedIntValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned integer value contained in the byte array, and described by this binary data format, into an unsigned integer in the host's native binary data format.
unsignedIntValues(byte[], int[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary unsigned int values contained in the byte array, and described by this binary data format, into an array of unsigned ints in the host's native binary data format.
unsignedLongLongValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned long long value contained in the byte array, and described by this binary data format, into an unsigned long long in the host's native binary data format.
unsignedLongLongValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned long long value contained in the byte array, and described by this binary data format, into an unsigned long long in the host's native binary data format.
unsignedLongLongValues(byte[], long[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary unsigned long long values contained in the byte array, and described by this binary data format, into an array of unsigned long longs in the host's native binary data format.
unsignedLongValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned long value contained in the byte array, and described by this binary data format, into an unsigned long in the host's native binary data format.
unsignedLongValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned long value contained in the byte array, and described by this binary data format, into an unsigned long in the host's native binary data format.
unsignedLongValues(byte[], long[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary unsigned long values contained in the byte array, and described by this binary data format, into an array of unsigned longs in the host's native binary data format.
unsignedShortValue(byte[]) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned short value contained in the byte array, and described by this binary data format, into an unsigned short in the host's native binary data format.
unsignedShortValue(byte[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the binary unsigned short value contained in the byte array, and described by this binary data format, into an unsigned short in the host's native binary data format.
unsignedShortValues(byte[], short[], int) - Method in class edu.sdsc.grid.io.BinaryDataFormat
Decodes the nValues binary unsigned short values contained in the byte array, and described by this binary data format, into an array of unsigned shorts in the host's native binary data format.
useDefaultPopupMenu(boolean) - Method in class edu.sdsc.grid.gui.JargonTree
If true, the default popup menu will be displayed.
USER_ADDRESS - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_AUDIT_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
audit on user comments
USER_AUDIT_TIME_STAMP - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
audit on user time stamp
USER_AUTHENTICATION_SCHEME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user authentication scheme in USER_DISTINGUISHED_NAME
USER_COMMENT - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_CREATE_DATE - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_DISTINGUISHED_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
distinguished name of user used by authentication systems
USER_DN - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_DOMAIN - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user domain name
USER_EMAIL - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_GROUP - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_GROUP_DOMAIN_DESC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
group user domain name
USER_GROUP_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
group user info modify date
USER_GROUP_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
name of user group
USER_GROUP_ZONE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
group user zone name
USER_ID - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_INFO - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_MODIFY_DATE - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_NAME - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_PHONE - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_TYPE - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
USER_TYPE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user type
USER_UDEF_MDATA_CREATE_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
USER_UDEF_MDATA_CREATE_DATE
USER_UDEF_MDATA_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
user-def metadata for user mod
USER_ZONE - Static variable in interface edu.sdsc.grid.io.UserMetaData
 
UserMetaData - Interface in edu.sdsc.grid.io
The metadata naming interface for user metadata.
userName - Variable in class edu.sdsc.grid.io.RemoteAccount
The user name to send to the server.
usesProtocol(Protocol) - Method in class edu.sdsc.grid.io.MetaDataField
Test if this field uses the given protocol.

V

valueForPathChanged(TreePath, Object) - Method in class edu.sdsc.grid.gui.JargonTreeModel
Messaged when the user has altered the value for the item identified by path to newValue.
version - Static variable in class edu.sdsc.grid.io.irods.IRODSAccount
The iRODS version.
version - Static variable in class edu.sdsc.grid.io.srb.SRBAccount
The srb version.

W

write(int) - Method in class edu.sdsc.grid.io.GeneralFileOutputStream
Writes the specified byte to this file output stream.
write(byte[]) - Method in class edu.sdsc.grid.io.GeneralFileOutputStream
Writes b.length bytes from the specified byte array to this file output stream.
write(byte[], int, int) - Method in class edu.sdsc.grid.io.GeneralFileOutputStream
Writes len bytes from the specified byte array starting at offset off to this file output stream.
write(int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes the specified byte to this file.
write(byte[]) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes b.length bytes from the specified byte array to this file, starting at the current file pointer.
write(byte[], int, int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes len bytes from the specified byte array starting at offset off to this file.
write(String) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes a String to the file, by first converting the string to a byte array, using the String.getBytes() method.
write(byte[], int, int) - Method in class edu.sdsc.grid.io.irods.IRODSFileOutputStream
Writes len bytes from the specified byte array starting at offset off to this file output stream.
write(int) - Method in class edu.sdsc.grid.io.local.LocalFileOutputStream
Writes the specified byte to this file output stream.
write(byte[]) - Method in class edu.sdsc.grid.io.local.LocalFileOutputStream
Writes b.length bytes from the specified byte array to this file output stream.
write(byte[], int, int) - Method in class edu.sdsc.grid.io.local.LocalFileOutputStream
Writes len bytes from the specified byte array starting at offset off to this file output stream.
write(int) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
 
write(byte[], int, int) - Method in class edu.sdsc.grid.io.srb.SRBFileOutputStream
Writes len bytes from the specified byte array starting at offset off to this file output stream.
writeBoolean(boolean) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes a boolean to the file as a one-byte value.
writeBooleans(boolean[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes an array of boolean values to this output stream.
writeByte(int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes a byte to the file as a one-byte value.
writeBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes a sub array as a sequence of bytes.
writeBytes(String) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes the string to the file as a sequence of bytes.
writeBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.irods.IRODSRandomAccessFile
Writes a sub array as a sequence of bytes.
writeBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.local.LocalRandomAccessFile
 
writeBytes(byte[], int, int) - Method in class edu.sdsc.grid.io.srb.SRBRandomAccessFile
Writes a sub array as a sequence of bytes.
writeChar(int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the char value of the argument.
writeChars(String) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes a string to the file as a sequence of characters.
writeDouble(double) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the double value of the argument.
writeDoubles(double[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the double values of the argument array.
writeFloat(float) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the float value of the argument.
writeFloats(float[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the float values of the argument array.
writeInt(int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the int value of the argument.
writeInts(int[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the int values of the argument array.
writeLong(long) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the long value of the argument.
writeLongDouble(double) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the long double value of the argument.
writeLongDoubles(double[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the long double values of the argument array.
writeLongLong(long) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the long long value of the argument.
writeLongLongs(long[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the long long values of the argument array.
writeLongs(long[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the long values of the argument array.
writeShort(int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the short value of the argument.
writeShorts(short[], int) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes bytes to the output stream to represent the short values of the argument array.
writeUTF(String) - Method in class edu.sdsc.grid.io.GeneralRandomAccessFile
Writes a string to the file using UTF-8 encoding in a machine-independent manner.

Z

Z_CHANGE_ZONE_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
Z_INSERT_NEW_ALIEN_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
Z_INSERT_NEW_LOCAL_ZONE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
Z_MODIFY_ZONE_FOR_USER - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
Z_MODIFY_ZONE_INFO - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
Z_MODIFY_ZONE_LOCAL_FLAG - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
Z_MODIFY_ZONE_STATUS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
 
zone - Variable in class edu.sdsc.grid.io.irods.IRODSAccount
The iRODS zone.
ZONE_ADMIN_AUTH_SCHEME_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
admin's auth scheme of rem MCAT
ZONE_ADMIN_DISTIN_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
DN str of rem MCAT
ZONE_ADMIN_DOMAIN_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone admin's user domain name
ZONE_ADMIN_NAME - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
zone admin's username
ZONE_COMMENTS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
any comments about the zone
ZONE_CONTACT - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
who is in charge of the zone
ZONE_CREATE_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
when the zone was created
ZONE_LOCALITY - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
set to 1 for local zone, 0 otherwise
ZONE_LOCN_DESC - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
location desc for zone
ZONE_MODIFY_DATE - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
when the zone was modified
ZONE_NAME - Static variable in interface edu.sdsc.grid.io.ZoneMetaData
 
ZONE_NETPREFIX - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
address where (remote) MCAT is
ZONE_PORT_NUM - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
port num to reach (remote) MCAT
ZONE_STATUS - Static variable in class edu.sdsc.grid.io.srb.SRBMetaDataSet
1 for a valid zone
ZoneMetaData - Interface in edu.sdsc.grid.io
The metadata naming interface for file metadata.

A B C D E F G H I J L M N O P Q R S T U V W Z