Invited Lectures

2014

  • Bioinformatics in the Era of Open Science and Big Data Swiss Institute of Bioinformatics, Biel Switzerland, Jan 28, 2014 [PPT]
  • A Vision for Biomedical Research Pacific Symposium on Biocomputing, Hawaii, Janurary 4, 2014 [PPT]

2013

  • I Cannot Reproduce Work from My Own Laboratory, Data Literature Integration Workshop, EBI, UK December 11, 2013 [PPT]
  • A Recipe for Sustainable Software WSSSPE, Denver, November 17, 2013 [PPT]
  • Is a Biological Database Really Different from a Biological Journal? IDASH virtual seminar October 18, 2013 [PPT] [video]
  • From B Student to Associate Vice Chancellor and Professor ACS Student Group, UC San Diego October 16, 2013 [PPT]
  • UCSD Progress in Innovation CONNECT Commercialization Council San Diego, October 3, 2013 [PPT]
  • The Era of Open WikiSymm Conference, Hong Kong, August 7, 2013 [PPT]
  • Drug Repurposing Against Infectious Diseases By Integrating Chemical Genomics and Structural Systems Biology, ISMB, Berlin July 21, 2013 [PPT]
  • A Few Overarching Thoughts on Digital Publishing and How You Can Participate, ISMB, Berlin July 21, 2013 [PPT]
  • The 3D Virtual Cell Project NSF Washington DC, June 28, 2013 [PPT]
  • Thoughts from the Biomedical Sciences Second Open Economics Workshop, Boston, March 11, 2013 [PPT]
  • Best Practices for Data: A Biologists View Research Data Alliance, Gottenburg, Sweden, March 20, 2013 [PPT]

2012

  • Towards Systems Pharmacology BIOTEC Forum, Dresden, Germany, December 5, 2012 [PPT]
  • Open Access Panel Discussion Universities Allied for Essential Medicines Conference, UC Irvine, November 3, 2012.
  • Open Data – Where Do We Stand from A Researcher's Perspective? Kansas State University, Manhatten, Kansas, October 23, 2012 [PPT].
  • Towards Accelerating Innovation at UCSD (with Sandra Brown) CONNECT Advisory Board Meeting, San Diego, September 26, 2012 [PPT].
  • Near Term Scientific Impact of the Data Web Forum National Academy of Sciences, Washington DC, August 29, 2012. [PPT;MP3]
  • Hiring and Supervising ISMB Workshop - From Postdoc to Principle Investigator 2012 Long Beach CA, July 17, 2012 [PPT]
  • Open Particapatory Science Transforming Opportunities in Scholarly Discourse, Birmingham UK July 6, 2012 [PPT]
  • Using Bioinformatics and Systems Biology to Enable Early Stage Drug Discovery CIBCB, San Diego, May 10, 2012.
  • Bioinformatics in the Bourne Lab BILD94 Undergraduate Lecture, UCSD, May 3, 2012.
  • Communicating Systems Biology - Why and How We Should Do Better in a Digital World ICBP Workshop, Houston, April 27, 2012 [PPT]
  • The Story of Meridith Sage Bionetworks Congress San Francisco, April 20, 2012 [Video]
  • What Happens When We Take a Drug? VANBUG, Vancouver, April 12, 2012. [Powerpoint]
  • A Career in Computational Biology Kearny High School March 5, 2012
  • Computational Approaches in Network Pharmacology Tri-Con San Francisco Feb. 22, 2012 [Powerpoint]
  • One Scientist's Wish List for Scientific Publishers. Conference of American Chemical Society Editors, La Jolla Jan. 6, 2012. [Powerpoint]

2011

  • Open Data Driven Scholarly Communication in 2020 7th International Data Curation Conference, Bristol, UK, Dec 7, 2011 [Powerpoint]
  • Its Not Just About Papers Anymore Elsevier Labs on Line Webinar November 14, 2011 [Powerpoint]
  • Searching Deeply for Data, Results and Tools. What is Stopping Us? Berlin 9 Washington DC November 9, 2011 [Powerpoint]
  • SciVee & BioLIT Demo 2011 eScience Workshop Transforming Scholarly Communication Harvard University, Oct. 24, 2011 [Video]
  • What Will Be The Impact of Future Changes in Digital Scholarship on Marine Biodiversity? Marine Biodiversity Conference, Aberdeen Sept 30, 2011 [Powerpoint]
  • Using Open Access Content New Trends for Scientific Dissemination Trieste Italy Sept 26, 2011 [Powerpoint]
  • PLoS Why it is a Model to be Emulated New Trends for Scientific Dissemination Trieste Italy Sept 26, 2011 [Powerpoint]
  • Ten Simple Rules for Open Access Publishers Open Access Scholarly Publishers Association Tallinn, Estonia Sept 21 [Powerpoint]
  • Making Beyond the PDF Current Practice Dagstuhl Workshop, Germany16 Aug 2011 [Powerpoint]
  • Collaboration, PopTech Washington DC, August 5, 2011.
  • The Path to Open Science with Illustrations from Computational Biology Microsoft Research Faculty Summit, Cartagena, Columbia, May 18, 2011 [Powerpoint] [Video]
  • Bioinformatics Meets Systems Biology for Early Stage Drug Discovery NBIC The Netherlands, April 22, 2011 [Powerpoint]
  • What Open Acces Potentially Means to a Scientist National Bioinformatics Center Workshop, The Netherlands, April 21, 2011 [Powerpoint]
  • CV Talk NBIC Regional Student Group, The Netherlands, April 20, 2011 [Powerpoint]
  • Digital Research Analog Publishing - One Scientist's View UKSG, Harrogate Yorkshire, April 4, 2011 [Powerpoint]
  • A Few RDAP Thoughts Based on Experience with the RCSB Protein Data Bank Research Data Access and Preservation (RDAP) Summit 2011, Denver March 31, 2011 [Powerpoint]
  • Mining Databases for Understanding Target Recognition Workshop in Allosteric and Orthosteric Ligands in Drug Action UCSD Mar 12, 2011 [Powerpoint]
  • The Changing Face of Scholarly Communication and the Opportunities it Affords the Bioinformatics/Systems Biology Student UCSD Student Expo Feb 28, 2011 [Powerpoint]
  • Computational Biology Feb. 7, 2011, Chattanooga Research Institute, Chattanooga [Powerpoint]
  • What Do I want from a Publisher of the Future? Jan 20, 2011, Elsevier VPs Meeting [Powerpoint]
  • High Throughput Computational Strategies for Proteomics Jan 13, 2011, PepTalk, San Diego [Powerpoint]
  • Hybrid Journals: Two Domain Scientist / Faculty Member Perspectives American Library Association, Jan 8, 2011, San Diego [Powerpoint]

2010

  • Polypharmacology Studied Using Structural Bioinformatics and Systems Biology December 8, 2010 University College London UK [Powerpoint]
  • Addressing the Discontinuity between Doing Research and Disseminating Research STM Innovations Seminar December 3, 2010 London, UK [Powerpoint]
  • Polypharmacology - The Good News and Bad News of Possible Cancer Therapy UCSD Cancer Center November 23, 2010 [Powerpoint]
  • Profesional Development Workshop - Collaboration University of the Central Carabean, Puerto Rico November 19, 2010 [Powerpoint]
  • The Reaming of Life Jim Gray Award Lecture Microsoft eResearch Summit Berkeley CA Oct 12, 2010 [Video] [Powerpoint] [Blog post]
  • The Future of Data Sharing Platforms in Academic Medicine Physician Scientist Career Development Meeting New York Nov 4, 2010. [Powerpoint]
  • Writing a Good Paper ISMB July 13, 2010 Boston [Powerpoint]
  • What I want from a Publisher of the Future STM Meeting Keynote April 28, 2010 Boston. [Powerpoint]
  • A Career of Computers in Biology Chula Vista High School, March 15, 2010. A Nifty One-Fifty Presentation as Part of the San Diego Science Festival [Powerpoint]
  • Who Owns the Data? Center for Ethics Seminar Series, Ruben H. Fleet Science Center, March 3, 2010. [Powerpoint] [Video]
  • Telling Research Stories through SciVee AAAS Annual Meeting, San Diego, Feburary 21, 2010. [Powerpoint]
  • New Targets for Old Drugs: Ideas from In silico Analysis, WPS-AMEFAR Meeting, San Diego, Feburary 10, 2010 [Powerpoint]
  • Experiences with Rich Media in the Dissemination and Comprehension of Science (Dumbing Down or Opening New Horizons?) ICSTI Winter Meeting Paris, Feburary 8, 2010. [Powerpoint]

2009

  • Polypharmacology: Drug Discovery in the Era of Genomics and Proteomics Rocky 09 Keynote, Snowmass Colorado, December 10, 2009 [Powerpoint]
  • The Evolution of Protein Structure and Function as Studied through Structural Bioinformatics BHT Keynote Hamilton Ontario November 6, 2009 [Powerpoint]
  • Using Protein Structure to Study Network Pharmacology HWI Buffalo, November 5, 2009 [Powerpoint].
  • The Changing Landscape of Scholarly Communication as it Relates to the Biosciences Keck Symposium Keynote Houston October 29, 2009 [Powerpoint]
  • PLoS, Semantic Enrichment Tools, Database and Literature Integration Trieste October 2009 [Powerpoint]
  • Some Thoughts on Open Science Ben Franklin Award Lecture BioIT World Boston April 2009 [Powerpoint]
  • Changes in Scholarly Communication and the Potential Impact on Biocuration 3rd International Biocurators Conference Berlin April 2009 [Powerpoint]
  • Nothing in Biology {Including Drug Discovery} Makes Sense Except in the Light of Evolution Purdue & UI April 2009 [Powerpoint]
  • I am Not a Scientist I am a Number Allen Press, National Press Club Washington DC April 2009 [Powerpoint] [Meeting Details]
  • Finding Ligand Binding Sites on a Protein-wide scale and its implications HUPO San Diego February 2009 [Powerpoint]
  • Open Science One Persons View and What we are Doing About It Keynote Lecture PSB January 2009 Hawaii [Powerpoint]

2008

  • Machine Learning in the New World of Scholarly Communication Keynote Lecture The Seventh International Conference on Machine Learning and Applications La Jolla December 2008 [Powerpoint]
  • Open Access Day Webcast from UCSD October, 2008 [Powerpoint] [Video]
  • BioPathways Keynote Toronto ISMB July 2008 [Powerpoint]
  • 3Dsig Keynote Toronto ISMB July 2008 [Powerpoint]
  • Bioontologies Keynote Toronto ISMB July 2008 [Powerpoint]
  • Automated Functional Prediction Toronto ISMB July 2008 [Powerpoint]
  • Professional Development Tutorial Toronto ISMB July 2008 [Powerpoint]

- 2007

  • Evolutionary Insights from Protein Structure Dalhousie University December 2007 [Powerpoint]
  • Thinking Outside the Box: Applications Including Finding Off-targets for Major Pharmaceuticals Winter School in Mathematical and Computational Biology Plenary Lecture Brisbane Australia June 2007 [Powerpoint]
  • Thoughts on the Future of Scientific Dissemination eResearch Australasia Keynote Lecture Brisbane Australia June 2007 [HTML]
  • The RCSB Protein Data Bank: Teaching an Old Dog New Tricks Swiss-Prot 20th Anniversary Fortaleza, Brazil, July-Aug, 2006. [Powerpoint]
  • Machine Learning as Applied to Structural Bioinformatics: Results and Challenges DIMACS Workshop on Machine Learning Techniques in Bioinformatics July 2006 [Powerpoint]
  • The Future of Structure Genomics Pacific Symposium on Biocomputing, Jan. 8, 2004 [Powerpoint]
  • Keynote: The Future of Bioinformatics The 2nd Asia-Pacific Bioinformatics Conference (APBC'04), Jan. 19, 2004 [Powerpoint]
  • The Future of Bioinformatics World University Network Broadcast Feb. 25, 2004 [Powerpoint]
  • The Future of Bioinformatics Michael Conrad Memorial Lecture Wayne State University April 13, 2004 [Powerpoint] [Video]
  • Biological Databases ISMB 2004 Introductory Session, Glasgow August 4, 2004 [Powerpoint]
  • A Royal Wedding – The Marriage between PLoS and the International Society for Computational Biology Emerging Trends Seminar, Allen Press Washington DC April 13, 2005 [Powerpoint]
  • How to Write a Scientific Paper ISMB 2005 On Behalf of the Student Council, Detroit, June 28, 2005 [Powerpoint]