Databases
Biological Structure
| The RCSB Protein Data Bank (PDB) | The single worldwide source of primary structural data on biological macromolecules determined experimentally. Developed in collaboration with Rutgers University our partner in the Research Collaboratory for Structural Bioinformatics (RCSB). |
| Functional Site Classification (SMAP) | Software and associated documentation for finding comparable ligand binding sites. |
| Domain Assignment (PDomains) | The main goal of this resource is to better understand principles behind structural domains identified from 3D coordinates ref . |
| Structure Comparison Database (CE) | Pair-wise structure comparisons based on the Combinatorial Extension (CE). |
| Common Subdomains | Compilation of recurring protein substructures. |
| Extended GO Annotation of PDB Chains | Use of structure comparison to extend the coverage of GO terms in the PDB. |
| Protein DNA Complexes | Automated classification of protein-DNA complexes of known structure. |
| Multiple Structure Alignment CE-MC | Starting from CE pair wise alignments a multi-structure alignment is computed using a Monte Carlo optimization technique (hosted in Rome). |
| Con-Struct Map | Graphical comparison of contact maps. |
Signal Transduction
| Kinase Alignments | Hand curated protein kinase-like superfamily structure alignments. |
Immunology
| Immune Epitope Database (IEDB) | Information that facilitates the dissemination of immune epitope information, the generation of new research tools, diagnostic techniques, vaccines and therapeutics for emerging and re-emerging diseases. |