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Shindyalov I.N., Chang W., Pu C., Bourne P.E. MMQL an object oriented macromolecular query language: prototype data model and implementation (1994) Prot. Engng., 7, 1311-1322.
Shindyalov I.N., Chang W., Cooper J.A., Bourne P.E. Design and use of a software framework to obtain information derived from macromolecular structure data (1995) Proceeding of the 28th annual Hawaii international conference on system science. Vol. V. Biotechnology Computing, IEEE Computer Society Press, 207-216.
Shindyalov I.N., Chang W., Cooper J.A., Bourne P.E. An object oriented framework to assist in knowledge discovery from 3-D macromolecular structure data (1994) Third International Conference on Bioinformatics and Genome Research, Tallahassee, FL, 11.
Bourne P.E., Shindyalov I.N., Chang W. MMQL: macromolecular query language (1994) American Crystallographic Association, Annual Meeting, Atlanta, GA, 68.
Shindyalov I.N., Chang W., Bourne P.E. Object oriented macromolecular query language: grammar, C++ class-library and X-based user interface (1993) Rational Drug Design , IBC, San-Diego, CA, B-3.