Structure Comparison Methods

Click on the left most link to review the entries for 2CPK


FSSP Fold classification based on Structure-Structure alignment of Proteins [top]
European Bioinformatics Institute (EBI)
Features: Complete PDB, fold tree, domain dictionary, sequence neighbors, structure superposition
Reference: Holm and Sander (1998)  Nucl. Acids Res. 26 316-319
CE Combinatorial Extension of the optimal path [top]
Research Collaboratory for Structural Bioinformatics (RCSB)
Features: Complete PDB and representative structure comparison, structure alignments, structure superposition tool
Reference:  Shindyalov and Bourne (1998) Protein Engineering 11(9) 739-747
VAST Vector Alignment Search Tool [top]
National Center for Biotechnology Information (NCBI)
Features: Complete PDB and representative structure comparison, structure alignments, structure superposition tool
Reference: Gibrat, Madej and Bryant (1996) Current Opinion in Structural Biology 6 377-385

All are accessible from the PDB "Structure Neighbors" Option