Evening Journal Club Season Winter/Spring 2006
Held Mondays at
11:30am – Pizza is Served
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Date |
Subject |
Presented by |
Slides |
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Feb 6 |
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Feb 13 |
Cheng G, Qian B, Samudrala R, et al. Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design NAR 33 (18): 5861-5867 2005 {medline} |
Jenny Gu |
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Feb 27 |
Min Wang, Thomas E. Wales, and Michael C. Fitzgerald Conserved thermodynamic contributions of backbone hydrogen bonds in a protein fold. PNAS 103(8) 2600-04 [abstract] |
Ines Thiele |
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March 13 |
Protein family clustering for
structural genomics. |
Julia Ponomarenko |
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March 20 |
Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study Chikenji G, Fujitsuka Y, Takada S. PNAS 2006 Feb 17 [abstract] |
Peng-Liang Wang |
[slides] |
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March 27 |
Physical Origins of Protein Superfamilies Zeldovich et
al. (2006) JMB 357(4) 1335-43 [abstract] |
Lei Xie |
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April 10 |
"Evolutionary coupling of
structural and functional |
Song Yang |
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April 17 |
"Systematic analysis of human
kinase genes: a large number of genes and alternative splicing events result in
functional and structural diversity." Milanesi L, Petrillo M, Sepe L, Boccia
A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella
G. BMC Bioinformatics 2005 Dec 1; 6 Suppl 4:S20 [paper] |
Kristine Breidis |
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April 24 |
Group II intron retroelements: function and diversity. [paper] |
Stella Veretnik |
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May 1 |
E.J.
Deeds, O Ashenberg, and E.I. Shakhnovich (2006), A simple physical model
for scaling in protein-protein interaction networks, PNAS 103, 311-316. [abstract] |
Apostol Gramada |
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May 8 |
Stockwell
GR, Thornton JM. |
Vicente Reyes |
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May 15 |
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Abdur Sikder |
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