VISTA(L) CSDS Commands VISTA(L) NAME vista - 3D structural statistics display package SYNOPSIS vista [ -j ] jobname [ -help ] [ -version ] [ -reorderbytes order ] [ - fig fig_file ] [ -of output_file ] [ -db database_file1 [ ... database_fileN ] ] DESCRIPTION vista displays chemical structure statistics generated from the output of quest(l) runs. OPTIONS -j jobname Specify a jobname for this run of vista. Output files will be given the root name jobname. -db database1 ... databaseN Search this database instead of the default `Master' database. This flag must appear after all others (see ENVIRONMENT below). vista will search the database specified by the triplet database.ind, database.msk and database.ind (The extensions .ind , .msk and .tcd are invariant). If more than one database is specified on the command line the specified databases will be searched in the order given. The keyword `Master' (case sensitive) can be used to refer to the default master database. -reorderbytes byteorder Flag the database files as having a non-native integer format. Note that all subset databases created using the SAVE ASER option are in native format and that you cannot mix native and non-native databases. Valid values for are: OPPOSITE_ENDIAN or an integer representing the required byte-reordering (e.g. 4321 has the same effect as OPPOSITE_ENDIAN ). See the CSD_DB_REORDER_BYTES environment variable in the ENVIRONMENT section. - fig fig_file Configure the graphics for vista from the file fig_file. (See VIS- TAFIG in the ENVIRONMENT section.) -version Print version information for the current CSDS. -help Display these manual pages. -of output_filename Write output to output_file instead of standard out. Useful for batch runs with the at(1) command. CSD System Last change: $Date: 1998/01/14 09:56:28 $ 1 VISTA(L) CSDS Commands VISTA(L) ENVIRONMENT vista recognises a number of environment variables. When the CSDS was configured (using config.sh) default values were (implicitly) assigned to the environment variables: CSDHOME and CSDMACHINE. They can, however, be overridden by expli- citly defining them within the current environment. CSDHOME Look for auxiliary executables, scripts and tables in the directory pointed to by $CSDHOME. This directory should be accessible to all potential users of the Cam- bridge Crystallographic Data System and must be acces- sible by vista. CSDMACHINE Use the executables and database for machine type $CSDMACHINE. It is possible, especially with the net- work file system (NFS), to have different types of machines accessing the database. This variable speci- fies the current machine type to the CSDS. CSD_DBFILE If set, vista looks for the names of the database files in the file pointed by $CSD_DBFILE. Otherwise it searches for the names list in the following files: $CSDHOME/csds/db_$CSDHOST.dbl $CSDHOME/csds/db_$CSDMACHINE.dbl $CSDHOME/csds/db.dbl using the first one found. CSD_DB_REORDER_BYTES Forces all database files to be interpreted in non native format. Integer bytes will be reordered accord- ing to the value of this variable. CSD_CDROM_FILENAMES If defined, CSD_CDROM_FILENAMES should be a script that reads filenames/directory_names from standard input and writes the equivalent CD-ROM names to standard output. For example if the filenames in the cdrom appear as uppercase with version numbers then (in the Bourne shell) type: CSD_CDROM_FILENAMES="eval tr '[a-z]' '[A-Z]' | sed -e '/[^/]$/s/$/;1/'" export CSD_CDROM_FILENAMES This will translate such names as csds/ and csds/version.txt to CSDS/ and CSDS/VERSION.TXT;1 respectively. FILES Input Files: CSD System Last change: $Date: 1998/01/14 09:56:28 $ 2 VISTA(L) CSDS Commands VISTA(L) jobname.virtual_db Contains a list of refcode names that act as a filter. If it doesn't exist then it is linked to the first file found, if at all, in the following list: `-v' virtual_db, $QUESTVIRTUALDB. jobname.fig The vista graphics configuration file. (Allows users to change the colours used by the graphics, for example.) If it doesn't exist it is linked to the first file found in the list: command-line $VISTAFIG, ./vista.fig, $HOME /vista.fig, $CSDHOME /csds/vista.fig. CSD_DBFILE override the use of this file. $CSDHOME/csds/vista.hlp The vista on-line help file. SEE ALSO The "Unix Installation Notes", CCDC. DIAGNOSTICS The diagnostics produced by vista are intended to be self- explanatory. The output of vista is explained in the "Get- ting Started Guide.". CSD System Last change: $Date: 1998/01/14 09:56:28 $ 3