GSTAT(L) CSDS Commands GSTAT(L) NAME gstat - calculate 3-D chemical geometry statistics SYNOPSIS gstat [ -j ] jobname [ -version ] [ -help ] [ < input_file ] [ > output_file ] DESCRIPTION gstat calculates geometry statistics using information derived from quest(l). It reads commands from standard input, writes to standard output and also writes a number of listing files. OPTIONS -j jobname Specifies the root filenames for this run of gstat. This option must be specified. -version Gives details of the current version of the CSDS. -help Print these man pages. ENVIRONMENT gstat recognises the same environment variables as quest(l). When the CSDS was configured (using config.sh) default values were (implicitly) assigned to the environment vari- ables: CSDHOME and CSDMACHINE. They can, however, be over- ridden by explicitly defining them wthin the current environment. CSDHOME Look for auxiliary executables, scripts and tables in the sub-directories pointed to by $CSDHOME This direc- tory should be accessible to all potential users of the Cambridge Crystallographic Data System and must be accessible by gstat. CSDMACHINE Use the binary executables from directory $CSDHOME/bin/d_$CSDMACHINE. It is possible, especially with the network file system (NFS), to have different types of machines accessing the database. This variable specifies the current machine type to the CSDS. CSD_CDROM_FILENAMES If defined, CSD_CDROM_FILENAMES should be a script that reads filenames/directory_names from standard input and writes the equivalent CD-ROM names to standard output. For example if the filenames in the cdrom appear as uppercase with version numbers then (in the Bourne CSD System Last change: $Date: 1998/01/14 09:56:20 $ 1 GSTAT(L) CSDS Commands GSTAT(L) shell) type: CSD_CDROM_FILENAMES="eval tr '[a-z]' '[A-Z]' | sed -e '/[^/]$/s/$/;1/'" export CSD_CDROM_FILENAMES This will translate such names as csds/ and csds/version.txt to CSDS/ and CSDS/VERSION.TXT;1 respectively. FILES Input Files: jobname.dat Structure information is to be read from this file in FDAT format. jobname{.frg,.fgn} Fragment values used in quest run. SEE ALSO The "Unix Installation Notes", CCDC. and "Volume 4. Cam- bridge Structural Database System". quest(l). DIAGNOSTICS The diagnostics produced by gstat are explained in Volume 4 of the "CSD System Documentation." BUGS The functionality of gstat has been dived between the two programs vista(l) and quest(l). CSD System Last change: $Date: 1998/01/14 09:56:20 $ 2