Back to Main Index

CONTENTS VOLUME 2

1. THE BUILD MENU
2. THE 2D-CONSTRAIN SUB-MENU
3. THE 3D-CONSTRAIN SUB-MENU
4. THE DISPLAY MENUS
5. THE EDIT MENU
6. THE FILES MENU
7. THE NUMERIC SUB-MENU
8. THE QUEST SUB-MENU
9. THE SCREEN SUB-MENU
10. THE SEARCH MENU
11. THE TEXT SUB-MENU

CHAPTER 1 THE BUILD MENU

• CONTENTS
• BOND TYPES
• CANCEL
• CHAIN
• CLEAR
• COMMAND
• 2D-CONSTRAIN
• 3D-CONSTRAIN
• DEFINE-STRUCTURE
• DELATM
• DELBND
• DRAW
• ELEMENT TYPES
• EXIT
• FASTQUEST
• FUSE
• GRID
• GROUPS
• HELP
• LIGAND
• MOVE
• QUEST
• REFRESH
• REPEAT
• RING
• SPIRO
• TEMPLATES
• TEMPLATE: FELDMANN NOTATION
• TEMPLATES: WRITE-TEMPLATE
• TEMPLATES: DELETE-TEMPLATES
• TEMPLATES: ADD-CATEGORY
• TEMPLATES: DELETE-CATEGORY
• TYPE
• UNDO

CHAPTER 2 THE 2D-CONSTRAIN SUB-MENU

• CONTENTS
• ALLBOND
• ALL-EXACT
• CHARGE
• COMMENT
• CYCLICITY
• DEFINE-STRUCTURE
• DICE
• Display of Atom and Bond Properties
• EXACT
• GENERATE-HYDS
• HYDROGENS
• MIN-CONNECTIONS
• NO-CYCLIC-ROUTES
• NO-LINKS
• NOSCREENS
• NUMBER-OF-FRAGS
• NUMBERS
• SAME-RESIDUE
• SIMIL
• TANI
• TOTAL-COORD-NO

CHAPTER 3 THE 3D-CONSTRAIN SUB-MENU

• CONTENTS
• DEFINE ALL-ANGL
• DEFINE ALL-BOND
• DEFINE ALL-TORS
• DEFINE *ALSUN
• DEFINE ATOM-LABEL
• DEFINE ATOM-RADIUS
• DEFINE *CREMER
• DEFINE *LP2
• DEFINE *LP3
• DEFINE *MASK
• DEFINE PARAMETER
• DEFINE-STRUCTURE
• DEL-INSTRUCTIONS
• ENANTIOMER INVERT
• ENANTIOMER NOINVERT
• ENANTIOMER NORMAL
• EXHAUSTIVE
• HIST and SCAT
• INSTRUCTIONS
• MANUAL-MODE
• NON-BONDED CONTACT
• NON-BONDED GROUP
• NON-BONDED VDW-RAD
• NUMBERS
• OVERLAP
• PERMUTE
• SELECT
• SETUP CENTROID
• SETUP DUMMY
• SETUP PLANE
• SETUP VECTOR
• SORT
• SPHERE EXCLUSION
• SPHERE INCLUSION
• SUMMARY
• SYMM-CHECK
• TRANSFORM

CHAPTER 4 THE DISPLAY MENUS

• CONTENTS
• 2D Display
• 3D Display
• 1D display
• COLOUR ELEMENT
• COLOUR HIGHLIGHT
• COLOUR MONO
• COLOUR RESIDUE
• COLOUR SYMM-OP
• CONTROL EXIT
• CONTROL HELP
• CONTROL KEEP
• CONTROL QUIT
• CONTROL REJECT
• CONTROL STOP
• CONTROL USE-AS-QUERY
• DIALBOX
• 3D-SEARCH INFO PARAM
• 3D-SEARCH INFO SETUPS
• FAST DIAG
• FAST HIT-STATS
• FAST NODIAG
• FAST REFCOD
• LABEL ALL
• LABEL LIST
• LABEL NONE
• LABEL NONH
• MEASURE ANGLE
• MEASURE DIST
• MEASURE TORS
• OPTIONS COORD
• OPTIONS DEBUG
• OPTIONS INFO
• OPTIONS MORE
• OPTIONS ORTEP
• OPTIONS SCREENS
• RENDER CELL
• RENDER HYDR
• RENDER PACK
• RENDER REFRESH
• RENDER RESET
• RENDER SET-PACK

CHAPTER 5 THE EDIT MENU

• CONTENTS
• ATOM
• BOND
• BOND TYPES
• BOX
• CANCEL
• DEL-LIG
• DEL-REP
• EDIT-LIG
• EDIT-REP
• ELEMENT TYPES
• EXIT
• GRID
• HELP
• LABEL-CARBONS
• REFRESH
• RESIDUE
• UNDO
• WHOLE

CHAPTER 6 THE FILES MENU

• CONTENTS
• CANCEL
• DELETE-FRAGMENT
• EXIT
• FETCH-FRAGMENT
• HELP
• REFRESH
• STORE-FRAGMENT

CHAPTER 7 THE NUMERIC SUB-MENU

• CONTENTS
• *ADATE
• *ALPHA, *BETA and *GAMMA
• *BATCH
• *BCLASS (obsolete)
• *BRV1
• *BRV2
• *CASNUMBER (obsolete)
• *CATFLAG
• *CELA, *CELB and *CELC
• *CLASS
• *CODEN
• *COORDINATES
• *DENC *DENX (*DENM is obsolete)
• *INTFLAG
• *MATFLAG
• *MAXATOMICNO
• *MDATE
• *METRICCLASS
• *MSDBIB
• *NBSIDNUMBER
• *NRESIDUES
• *NW0n
• *RCPn
• *RCVOLUME
• *RFACTOR
• *SIGFLAG
• *SPGNUMBER
• Standard Numeric Prompts
• *TEMPERATURE
• *TOLERANCE
• *YEAR
• *ZPRIME
• *ZVALUE

CHAPTER 8 THE QUEST SUB-MENU

• CONTENTS
• QUESTION LOGIC
• REBUILD-FRAG
• RESET-LOGIC
• SHOW-CONTROLS
• START-SEARCH
• TERSE
• VERBOSE

CHAPTER 9 THE SCREEN SUB-MENU

• CONTENTS
• *BTEST
• NOSCREENS
• SCREEN

CHAPTER 10 THE SEARCH MENU

• CONTENTS
• BEGIN-AT-REFCODE
• CANCEL
• COMMAND
• CONCATENATE
• *ELEMENT
• ELEMENTS
• EXIT
• FASTQUEST
• FORMULAE
• GLIST ANGL
• GLIST BOND
• GLIST TORS
• HELP
• HITALL
• H-NORMALISE
• INFO
• *nCELL
• NOJOURNAL
• NOSCREENS
• NUMERIC
• PDB-SEARCH (obsolete)
• PDB-SEQUENCE (obsolete)
• *PDBSEQ Command line PDB interface (obsolete)
• *PEPTIDE
• PEPTIDE-SEQ
• PRINT
• PRINT EXTRA
• PRINT NO-HIT
• PRINT REFC
• PRINT STAND
• QUEST
• REDUCED-CELL
• REFRESH
• *RESFORMULA
• *RESIDUE
• RETRIEVE
• SAVE
• SAVE ASER
• SAVE BCCAB
• SAVE CIF
• SAVE COORD
• SAVE FBIB
• SAVE FCON
• SAVE FDAT
• SAVE MODEL
• SAVE MOL2
• SAVE POSTSCRIPT
• SAVE REFC
• SCREENS
• START
• STATISTICS
• STOP-LIMIT
• *SUMFORMULA
• TEXT
• TYPE

CHAPTER 11 THE TEXT SUB-MENU

• CONTENTS
• *AUTHOR
• *CCOMMENT
• *COMPOUND
• *DISORDER
• *ERROR
• *FORMULA
• *JRNL
• *NAME
• *PAGE
• *PREFCODE
• *PROPERTIES
• *QUALIFIER
• *REFCODE
• *REMARKS
• *SPACEGROUP
• Standard Text Prompts
• *SURNAME
• *SYNONYM
• *TEXT
• *VOLUME
• *XNAME